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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttattttcaaagtgtagtgtagtagttgttggattttgtagaaaatttatttatgattcagtggaaatttgacgaatttgcagttatataactaaatattgtcagtgaatcaccaaaaatttgatgatcattaaatagtactcttcaatagaaaactgtgccttattggtgtcatattatttcagTTCCGTTCTTTATCAGATCAACTCTATCGTTCTCCGGACCACCACAAATTTGTGCGGCAGCAAATTGTTCAACAG

Basic information

species Glycine max
transcript GLYMA20G32220.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|41145981|gb|CK606192.1|CK606192
EST:     AGTTATATGATCTGATTGAATGCAAGGTTCAAGGAGATGGTAACTGCCAG                         TTCCGTTCTTTATCAGATCAACTCTATCGTTCTCCGGACCACCACAAATTT
genomic: AGTTATATGATCTGATTGAATGCAAGGTTCAAGGAGATGGTAACTGCCAGgttagttatt ... attatttcagTTCCGTTCTTTATCAGATCAACTCTATCGTTCTCCGGACCACCACAAATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaatagtactcttcaatagaaaactgtgccttattggtgtcatattatttcagTTCCGTTCTTTATCAGATCAACTCTATCGTTCTCCGGACCACCACAAATTTGTGCGGCAGCAAATTGTTCAACAG
                                              ttatttc  CT-rich tract
                                         tcatattattt  TA-rich tract