Sequence
atgc intronic sequence ATGC exonic sequenceTGTTATTAGTGATGACTTCTGGGATTCATTGGAAATATCGGATGAATCTTCTCTTGACGGTGAAGTTGGCAAAAGATTAAACCAGATGGTTCCCATTCCTgtaagtgtacctttagtgcagccacttgattttgttttaaagtcatcatgtttcacctttactataattttttattgtattagttgccatttgatttgtg...
Basic information
species | Glycine max |
transcript | GLYMA20G32220.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G32220.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g64219.1 (Oryza sativa), 5'ss of exon 2
TGTTATTAGTGATGACTTCTGGGATTCATTGGAAATATCG--GATGAATCTTCTCTTGACGGTGAAGTTGGCAAAAGATTAAACCAGATGGTTCCCATTCCTgtaagtgtacctttagtgcagccacttgattttgttttaaagtcatcat-gtttcacctttactat-aattttttattgtattagttgccatttgatttgtg-----------------------------------------------------------
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TAATCATAATGCCCATGACTGC--TTAATCGAGTTTGTCGATGATTTCTCTGCTCTAGATGGCCAAGTTGGCAAAAGATTACACGACATGATTCCCATTCCTgtaactaactctctactgcttattccccaccttctcttcacccattcatcatttaaatattcttgtcaaaatattaatccattaatgattaccttgcttcttcctcttcttcttcttgatgctacttgttggttaccctttccttccttctcttattgtag
upper sequence: GLYMA20G32220.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G035150_T02 (Zea mays), 5'ss of exon 3
TGTTATTAGTGATGACTTCTGGGATTCATTGGAAATATCGGATGAATCTTCT---CTTGACGGTGAAGTTGGCAAAAGATTAAACCAGATGGTTCCCATTCCTgtaagtg-tacctttagtgcagccacttgattttgttttaaagtcatcatgt--ttcacctttactataattttttattgtattagttgccatttg-atttgtg-------------------------
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---CGTCCAGGACAGCCAGCAATGCTTGATAGAGCTCATGGATAACTTCTCTGTCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCTgttagtactactattact--agtcactttgcttcctcatgcc-ttagcatgcaacctacatttactgctatttgcattctcaaacatcactgtgagtgtttctatagtctcttcattttgctattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|41145981|gb|CK606192.1|CK606192EST: CTCTTGACGGTGAAGTTGGCAAAAGATTAAACCAGATGATTCCCATTCCT CATGTTCCTAAAACCAATGAAAAAATACCATCTGATGATGAAGAAATATCA
genomic: CTCTTGACGGTGAAGTTGGCAAAAGATTAAACCAGATGGTTCCCATTCCTgtaagtgtac ... atgtttgcagCATGTTCCTAAAACCAATGAAAAAATACCATCTGATGATGAAGAAATATCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTATTAGTGATGACTTCTGGGATTCATTGGAAATATCGGATGAATCTTCTCTTGACGGTGAAGTTGGCAAAAGATTAAACCAGATGGTTCCCATTCCTgtaagtgtacctttagtgcagccacttgattttgttttaaagtcatcatgtttcacctttactataattttttattgtattagttgccatttgatttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG