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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGACCTTAAAAACTCAAAGGAGATACCTGCAAGAACTTCGAATTGTCAAGCATGTTGTGAAGGCTTCTTTTGTCCTCATGGGATTACATGCATGATACgtaagtataatgaatgggaatcttcaaaattctttcttcattacagattactgcaaatagcttctataggataatatatttttattcaatttttaagtat...

Basic information

species Glycine max
transcript GLYMA20G32210.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32210.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G166889_T01 (Zea mays), 5'ss of exon 3
GTTGACCTTAAAAACTCAAAGGAGATACCTGCAAGAACTTCGAATTGTCAAGCATGTTGTGAAGGCTTCTTTTGTCCTCATGGGATTACATGCATGATACgtaagtataatgaatgggaatcttcaaaattctttcttcattacagattactgcaaatagcttctataggata-atatatttttattcaatttttaagtat
||  || | ||| || |     | || ||  | |||||     | || | ||  || ||||  ||||||||||| ||||||||| | || |||||||||||||||||      || |||| | |  |  | ||  | |||  |     | |    ||||       |  |||| |||||| | |||  | |   |    | 
GTCAACTTAAAAGACGCCGTCAACATCCCGTCCAGAACCCTTGACTGCCGAGGTTGCTGTGCTGGCTTCTTTTGCCCTCATGGGCTCACTTGCATGATACgtaagta------ataggaagcct--agctactgccctcagcatgtcctgccagcaataatggtcttgtgatatatatatatctatctattcacttcacag

upper sequence: GLYMA20G32210.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g04600.t01 (Vitis vinifera), 5'ss of exon 3
GTTGACCTTAAAAACTCAAAGGAGATACCTGCAAGAACTTCGAATTGTCAAGCATGTTGTGAAGGCTTCTTTTGTCCTCATGGGATTACATGCATGATACgtaagtataatgaatgggaatcttcaaaattctttcttcattacagattactgcaaatagcttctataggataatatatttttattcaatttttaagtat----------
||| |||||||||| ||| || | || ||| | ||||||    ||||||| || |||||||| || ||||| || |||| ||| || || ||||||||||||||||||      || ||||  |   |||||||| ||   ||   || |||| ||  | ||| |||    | |  |  || | |     |||| || |           
GTTAACCTTAAAAATTCACAGAACATTCCTACCAGAACTCATGATTGTCAGGCTTGTTGTGAGGGTTTCTTCTGCCCTCGTGGTATCACTTGCATGATACgtaagtat------tgagaattcttttaattctttgttacata---atgactgaaagcaactt-tatgattttacttcattgtttgtggcttttgagaagtgattggcat