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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCATCAAAGACCTGGTATGCTGTTCCTGGTGATTATGCCTTTGCTTTTGAGGAAGTCATTCGCACTGAGGGTTATAGTGGTAACATTGATCACTTAGgtatgtgaatgctttgactattacctgattatgtttgatctatatatttggcatggcatattaagaaaagtgtgtagtgattcatagtgtcaaattttct...

Basic information

species Glycine max
transcript GLYMA20G32160.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32160.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g04520.t01 (Vitis vinifera), 5'ss of exon 1
GGCTCATCAAAGACCTGGTATGCTGTTCCTGGTGATTATGCCTTTGCTTTTGAGGAAGTCATTCGCACTGAGGGTTATAGTGGTAACATTGATCACTTAGgtatgtgaatgctttgactattacctgattatgtttgatctatatatttggcatggcat---attaagaa--aagtgtgtagtgattcatagtgtcaaattttct--
|||||  ||||||| |||||||| || || || |||||||| |||||||||||||||||||||||  |  ||| |||| | || || ||||| |  |||||||||  |     |||  || ||   ||  |||||| |||  ||||||  |||||  |    ||||||||  ||     |  |  |||   || |    |||  |  
GGCTCTCCAAAGACTTGGTATGCAGTCCCAGGAGATTATGCATTTGCTTTTGAGGAAGTCATTCGTTCACAGGCTTATGGAGGAAATATTGACCGTTTAGgtatggaa----cttgg-taatagtaga--atgtttaatcagtatattgagcatgtaaggcaattaagaactaaaaaaatgatacttctgtgtcttctgtttcatct