1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agtgatccatttatcttaaggtggttgactgctatacttccacagtgcatttgtaactcaagtacagtttcttttcttgccagctgcttgaaacttttagGTGAGAAAACAACTCTTTTATCACCTGAGGTAATTGTTGCATCTGGGATTCCTTGTTTCAG
species | Glycine max |
transcript | GLYMA20G32160.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tgcatttgtaactcaagtacagtttcttttcttgccagctgcttgaaacttttagGTGAGAAAACAACTCTTTTATCACCTGAGGTAATTGTTGCATCTGGGATTCCTTGTTTCAG
ttgtaac putative branch site (score: 2)
ctttt putative PPT
aaactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgatccatttatcttaaggtggttgactgctatacttccacagtgcatttgtaactcaagtacagtttcttttcttgccagctgcttgaaacttttagGTGAGAAAACAACTCTTTTATCACCTGAGGTAATTGTTGCATCTGGGATTCCTTGTTTCAG
- - - ccattta
- - - - - - - - - -ggtggtt
- - - - - - - - - - - - - -actgcta
- - - - - - - - - - - - - - - - - - cttccac
- - - - - - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctgct