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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGAAAATCAGCCTCAACAAGGGATATGTGGCTGGTATATTAACAGTGGATACTGTTGCAGACTTTCTGCCTAGGAAGGGACCATTGCGACAGAGAAGgtgagttgaagcttgcttctggaacttaggtttgtgtcttcaagatttgcatcataatttttgtcaacttttgacttgtgatgtgtcttcatagttcatg...

Basic information

species Glycine max
transcript GLYMA20G32020.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32020.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g04360.t01 (Vitis vinifera), 5'ss of exon 2
ATGGGAAAATCAGCCTCAACAAGGGATATGTGGCTGGTATATTAACAGTGGATACTGTTGCAGACTTTCTGCCTAGGAAGGGACCATTGCGACAGAGAAGgtgagtt-gaagcttgcttctggaacttaggtttgtgtcttcaagatttgcatcataatttttgtcaacttttgacttgtga-tgtgtcttcat--agttcatg
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ATGGGAAATTCAGTTTTAACAAGGGGTATGTAGCTGGGATATTAACAGTGGATACTGTTGCTGATTTTCTACCAAGGAAAGGCCCGCTTCGCCAAAGAAGgtgagtttggtattcttctttcctattcctgaaactattctgatagattgtgccat----tgtacaaggatttgacatgcaaatgcaactagatttggatgagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193579894|gb|FK533541.1|FK533541
EST:     TTGCGACAGAGAAG                         GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAG-AAAATTTAGGCG
genomic: TTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
EST: gi|193540177|gb|FK495647.1|FK495647
EST:     AGGGACCATTGCGACAGAGAAG                         GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
genomic: AGGGACCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
EST: gi|207807782|gb|GD778131.1|GD778131
EST:     GATACTGTTGCAGACTTTCTGCCTAGGAAGGGACCATTGCGACAGAGAAG                         GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTA
genomic: GATACTGTTGCAGACTTTCTGCCTAGGAAGGGACCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTA
EST: gi|208126091|gb|GD926035.1|GD926035
EST:     GATACTGTTGCAGACTTTCTGCCTAGGAAGGGACCATTGCGACAGAGAAG                         GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
genomic: GATACTGTTGCAGACTTTCTGCCTAGGAAGGGACCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
EST: gi|193677454|gb|FK619668.1|FK619668
EST:     TTGCGACAGAGAAG                         GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
genomic: TTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
EST: gi|213602030|gb|DB976249.1|DB976249
EST:     ATACTGTTGCAGAC-TTCATGCCTAGGAAGGGACCATTGCGACAGAGAAG                         GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
genomic: ATACTGTTGCAGACTTTC-TGCCTAGGAAGGGACCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
EST: gi|193317855|gb|FK284593.1|FK284593
EST:     ATACTGTTGCAGACTTTCTGCCTAGGAAGGGGACCATTGCGACAGAGAAG                         GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAG-AAAATTTAGGCG
genomic: ATACTGTTGCAGACTTTCTGCCTAGGAA-GGGACCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
EST: gi|193582689|gb|FK536041.1|FK536041
EST:     TTGCGACAGAGAAG                         GACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
genomic: TTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGGCG
EST: gi|193657670|gb|FK607213.1|FK607213
EST:     TTGCGACAGAGAAG                         GTACTTGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGG
genomic: TTGCGACAGAGAAGgtgagttgaa ... aatactgtagG-AC-TGGAATTGCATACATATCAAATGTGGCAGTCCGAGAAAAATTTAGG
EST: gi|208166231|gb|GD965465.1|GD965465
EST:     GATACTGTTGCAGACTTTCTGCCTAGGAAGGGACCATTGCGACAGAGAAG                         GACTGGAATTGCA
genomic: GATACTGTTGCAGACTTTCTGCCTAGGAAGGGACCATTGCGACAGAGAAGgtgagttgaa ... aatactgtagGACTGGAATTGCA