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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAGGTACTGGATTGGGTGCTGAGATCATTGGCACCTTTGTTTTGGTGTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATgttccggtaagttcaaaatcatttttcttattattagtttctgtttctgattctgttgccttgctttagttggtggtatgaataataagaatgtaatgaa...

Basic information

species Glycine max
transcript GLYMA20G32000.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348680|gb|BI974266.1|BI974266
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCAT                         GTTCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCAC
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATgttccggtaa ... tctgtattagGTT----TT--GGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCAC
EST: gi|18039862|gb|BM308156.1|BM308156
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCAT                         GTTCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCAC
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATgttccggtaa ... tctgtattagGTT----TT--GGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCAC
EST: gi|7690987|gb|AW759122.1|AW759122
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|7690987|gb|AW759122.1|AW759122
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|7690987|gb|AW759122.1|AW759122
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|7690987|gb|AW759122.1|AW759122
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|22525086|gb|BU083897.1|BU083897
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|22525086|gb|BU083897.1|BU083897
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|22525086|gb|BU083897.1|BU083897
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|22525086|gb|BU083897.1|BU083897
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|308099117|gb|HO760958.1|HO760958
EST:     CTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: CTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|308099117|gb|HO760958.1|HO760958
EST:     CTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: CTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|308099117|gb|HO760958.1|HO760958
EST:     CTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: CTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|308099117|gb|HO760958.1|HO760958
EST:     CTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: CTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|18041138|gb|BM309432.1|BM309432
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCAT                         GTTCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCAC
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATgttccggtaa ... tctgtattagGTT----TT--GGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCAC
EST: gi|15813569|gb|BI785844.1|BI785844
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|15813569|gb|BI785844.1|BI785844
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|15813569|gb|BI785844.1|BI785844
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|15813569|gb|BI785844.1|BI785844
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|33389560|gb|CA852767.1|CA852767
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|33389560|gb|CA852767.1|CA852767
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|33389560|gb|CA852767.1|CA852767
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|33389560|gb|CA852767.1|CA852767
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|16346559|gb|BI972154.1|BI972154
EST:     ACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|16346559|gb|BI972154.1|BI972154
EST:     ACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|16346559|gb|BI972154.1|BI972154
EST:     ACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|16346559|gb|BI972154.1|BI972154
EST:     ACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|13787332|gb|BG649924.1|BG649924
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|13787332|gb|BG649924.1|BG649924
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|13787332|gb|BG649924.1|BG649924
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|13787332|gb|BG649924.1|BG649924
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|19053458|gb|BM732125.1|BM732125
EST:     CTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: CTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|19053458|gb|BM732125.1|BM732125
EST:     CTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: CTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|19053458|gb|BM732125.1|BM732125
EST:     CTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: CTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|19053458|gb|BM732125.1|BM732125
EST:     CTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: CTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|31468344|gb|CD410372.1|CD410372
EST:     GTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: GTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|31468344|gb|CD410372.1|CD410372
EST:     GTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: GTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|31468344|gb|CD410372.1|CD410372
EST:     GTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: GTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|31468344|gb|CD410372.1|CD410372
EST:     GTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: GTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|192334592|gb|FK025181.1|FK025181
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGAT-CCCAT                         GTTCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCAC
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATgttccggtaa ... tctgtattagGTT----TT--GGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCAC
EST: gi|16345993|gb|BI971579.1|BI971579
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|16345993|gb|BI971579.1|BI971579
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|16345993|gb|BI971579.1|BI971579
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt
EST: gi|16345993|gb|BI971579.1|BI971579
EST:     ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTT                       
genomic: ACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCA---Tgttccggtaa ... tctgtatt

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACAGGTACTGGATTGGGTGCTGAGATCATTGGCACCTTTGTTTTGGTGTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATgttccggtaagttcaaaatcatttttcttattattagtttctgtttctgattctgttgccttgctttagttggtggtatgaataataagaatgtaatgaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggtgg