1 5' 3' | 2 5' 3' | 3 5' 3' |
GATCATGCTGATGCGTGTGGTGGGGTTGGCATTCTTGGCATTGCATGGGCCTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttctttcagatccctccctttgcttctaaaaagtatcttgtcatttgtcatgtttgctgcatgttttgcaagttctcatctttttgcactttt...
species | Glycine max |
transcript | GLYMA20G32000.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCEST: gi|18039862|gb|BM308156.1|BM308156
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGC
EST: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGGEST: gi|19452789|gb|BM954208.1|BM954208
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGGEST: gi|5666610|gb|AI930646.1|AI930646
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGGEST: gi|21601223|gb|BQ611554.1|BQ611554
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG GAGGTCACATTAACCCAGCAGTGACATNTTGGGCTGTTTTTGGCTCGCAAGEST: gi|193566088|gb|FK526383.1|FK526383
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACAT-TTGGGCTGTTTTTGGCTCGCAAG
EST: TCCTTGTCTACTGCACTGCTGGGATTTCAG GAGGTCACATTAACCCAGCAGTGAAATTTGGGCNGTTTTTGGCTCGCAAGGEST: gi|18041138|gb|BM309432.1|BM309432
genomic: TCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: CTGCACTGCTGGGATTTCAG GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGGEST: gi|24136831|gb|BU927341.1|BU927341
genomic: CTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGGEST: gi|26269348|gb|CA820411.1|CA820411
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGGEST: gi|6724348|gb|AW308747.1|AW308747
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG GAGGTCACATTAACCCAGCAGTGACATTTGNGCTGTTTTTGGCTCGCAAGGEST: gi|192334592|gb|FK025181.1|FK025181
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGGEST: gi|18039721|gb|BM308015.1|BM308015
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGGEST: gi|16346441|gb|BI972036.1|BI972036
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGGEST: gi|21601993|gb|BQ612324.1|BQ612324
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGGEST: gi|19937790|gb|BQ081422.1|BQ081422
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCATGCTGATGCGTGTGGTGGGGTTGGCATTCTTGGCATTGCATGGGCCTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttctttcagatccctccctttgcttctaaaaagtatcttgtcatttgtcatgtttgctgcatgttttgcaagttctcatctttttgcactttt
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG