1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcagaattctgagaattgaacttactgaatcctccacagtttgtctcttaacccaaaattccataaagtattcttatgtatcccttccctccatttgcagGTTTTTTGAAGCAGAAGAATGGACTTCTTTACTAGAGACATAAATGAGGATTCTATGCTTAGATGCCCATTCTTGAGGAACATCAATGAGCCTACTAACT
species | Glycine max |
transcript | GLYMA20G31850.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTTCGTCCCATTCTCGAATTGGCGTGTGCCTCTTGCAATCCCCCAAAG GTTTTTTGAAGCAGAAGAATGGACTTCTTTACTAGAGACATAAATGAGGATEST: gi|192330535|gb|FK022680.1|FK022680
genomic: TCCTTCGTCCCATTCTCGAATTGGCGTGTGCCTCTTGCAATCCCCCAAAGgtattattat ... ccatttgcagGTTTTTTGAAGCAGAAGAATGGACTTCTTTACTAGAGACATAAATGAGGAT
EST: TCCTTCGTCCCATTCTCGAATTGGCGTGTGCCTCTTGCAATCCCCCAAAG GTTTTTTGAAGCAGAAGAATGGACTTCTTTACTAGAGACATAAATGAGGATEST: gi|192300503|gb|FG988860.1|FG988860
genomic: TCCTTCGTCCCATTCTCGAATTGGCGTGTGCCTCTTGCAATCCCCCAAAGgtattattat ... ccatttgcagGTTTTTTGAAGCAGAAGAATGGACTTCTTTACTAGAGACATAAATGAGGAT
EST: TCCTTCGTCCCATTCCCGAATTGGCGTGTGCCTCTTGCAATCCCCCAAAG GTTTTTTGAAGCAGAAGAATGGACTTCTTTACTAGAGACATAAATGAGGAT
genomic: TCCTTCGTCCCATTCTCGAATTGGCGTGTGCCTCTTGCAATCCCCCAAAGgtattattat ... ccatttgcagGTTTTTTGAAGCAGAAGAATGGACTTCTTTACTAGAGACATAAATGAGGAT
tcttaacccaaaattccataaagtattcttatgtatcccttccctccatttgcagGTTTTTTGAAGCAGAAGAATGGACTTCTTTACTAGAGACATAAATGAGGATTCTATGCTTAGATGCCCATTCTTGAGGAACATCAATGAGCCTACTAACT
tcttaac putative branch site (score: 2)
ttcttatgtatccctt putative PPT
ataaagtattcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagaattctgagaattgaacttactgaatcctccacagtttgtctcttaacccaaaattccataaagtattcttatgtatcccttccctccatttgcagGTTTTTTGAAGCAGAAGAATGGACTTCTTTACTAGAGACATAAATGAGGATTCTATGCTTAGATGCCCATTCTTGAGGAACATCAATGAGCCTACTAACT
- - - ttctgag
- - - - - - - - - - cttactg
- - - - - - - - - - - - - - - cctccac
- - - - - - - - - - - - - - - - - - - - - - - - - -cccaaaa