1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgtgtaacgtgttgtgtcctataatttataaaatttgccatattcccgtatctgtaatgtatcttatccatgtcccatatcgaatttgtgctttcctagCTAAAGATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGATCCTCATAAGTACTGTCGTAATGTTATGCTCTGATCTCAACCTGGCTTG
species | Glycine max |
transcript | GLYMA20G31840.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAG CTAAAGATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGAEST: gi|193693275|gb|FK627230.1|FK627230
genomic: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAGgttggttatt ... gctttcctagCTAAAGATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGA
EST: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAG CTAAAGATGACATCTACCTTGCATTCCAACAAGGEST: gi|58016676|gb|CX703418.1|CX703418
genomic: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAGgttggttatt ... gctttcctagCTAAAGATGACATCTACCTTGCATTCCAACAAGG
EST: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGAT--- C---AGATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGAEST: gi|193707908|gb|FK647704.1|FK647704
genomic: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAGgttggttatt ... gctttcctagCTAAAGATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGA
EST: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAG CTAAAGATGACATCTACCTTGCATTCCAACAAEST: gi|58020292|gb|CX707034.1|CX707034
genomic: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAGgttggttatt ... gctttcctagCTAAAGATGACATCTACCTTGCATTCCAACAA
EST: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGAT--- C---AGATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGAEST: gi|193714075|gb|FK650553.1|FK650553
genomic: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAGgttggttatt ... gctttcctagCTAAAGATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGA
EST: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAG CTAAAGATGACATCTACCTTGCATTCCAACTAAGG
genomic: ATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAGgttggttatt ... gctttcctagCTAAAGATGACATCTACCTTGCATTCCAAC-AAGG
cccgtatctgtaatgtatcttatccatgtcccatatcgaatttgtgctttcctagCTAAAGATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGATCCTCATAAGTACTGTCGTAATGTTATGCTCTGATCTCAACCTGGCTTG
tgctttcct CT-rich tract
taatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgtaacgtgttgtgtcctataatttataaaatttgccatattcccgtatctgtaatgtatcttatccatgtcccatatcgaatttgtgctttcctagCTAAAGATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGATCCTCATAAGTACTGTCGTAATGTTATGCTCTGATCTCAACCTGGCTTG
- - - - - tgttgtg
- - - - - - - - - - - - - - - - - - tgccata
- - - - - - - - - - - - - - - - - - - - - - - - gtatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtccca