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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTGTGTGGATGGCCTCTGATCCATCCACCAGACCCGACTTGACCCGACTCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAGgtctgttcaatcaatccctacactcactctcctttgcaattcccttcaattatgttgtttttgttgctccaaaatttgttgatcgattcaattatggtgtgaag

Basic information

species Glycine max
transcript GLYMA20G31840.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120530301|gb|EH258435.1|EH258435
EST:     TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAG                         AGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA
genomic: TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAGgtctgttcaa ... tggtgtgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA
EST: gi|298187634|gb|HO034783.1|HO034783
EST:     TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAG                         AGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA
genomic: TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAGgtctgttcaa ... tggtgtgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA
EST: gi|58016676|gb|CX703418.1|CX703418
EST:     AGCCCAGAGAGAAG                         AGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA
genomic: AGCCCAGAGAGAAGgtctgttcaa ... tggtgtgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA
EST: gi|58020292|gb|CX707034.1|CX707034
EST:     TAAGCCCAGAGAGAAG                         AGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA
genomic: TAAGCCCAGAGAGAAGgtctgttcaa ... tggtgtgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA
EST: gi|16996305|gb|BM085677.1|BM085677
EST:     TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAG                         AGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA
genomic: TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAGgtctgttcaa ... tggtgtgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA
EST: gi|13787967|gb|BG650559.1|BG650559
EST:     TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAG                         AGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA
genomic: TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAGgtctgttcaa ... tggtgtgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA
EST: gi|298193968|gb|HO040616.1|HO040616
EST:     TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAG                         AGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA
genomic: TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAGgtctgttcaa ... tggtgtgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA
EST: gi|192329380|gb|FK021834.1|FK021834
EST:     TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAG                         AGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA
genomic: TCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAGgtctgttcaa ... tggtgtgaagAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGA