1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagttggttgttcattaatttgtcaattggaaataattggaaaacttatggtcctaacagagtggtgtattcttggcagGGACGCCTTGATCGCTTCTGTCCCGAGCTATGAGGAGCCTTATATTAAAGTTCCGAGGGTCTTAAGCATGGACTAAAGTTAAAATTGCTTAGACGAGTTA
species | Glycine max |
transcript | GLYMA20G31750.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAAAACAATTTGCGTGATAATGATCCTGAAACATTTGACCATAG GGACGCCTTGATCGCTTCTGTCCCGAGCTATGAGGAGCCTTATATTAAAGTEST: gi|254323067|gb|GR839980.1|GR839980
genomic: TGAAAACAATTTGCGTGGTAATGCTCCTGAAACATTTGACCATAGgtgagttggt ... ttcttggcagGGACGCCTTGATCGCTTCTGTCCCGAGCTATGAGGAGCCTTATATTAAAGT
EST: GAGACTGAAAACAATTTGCGTGGTAATGCTCCTGAAACATTTGACCATAG GGACGCCTTGATCGCTTCTGTCCCGAGCTATGAGGAGCCTTATATTAAAGT
genomic: GAGACTGAAAACAATTTGCGTGGTAATGCTCCTGAAACATTTGACCATAGgtgagttggt ... ttcttggcagGGACGCCTTGATCGCTTCTGTCCCGAGCTATGAGGAGCCTTATATTAAAGT
aattggaaataattggaaaacttatggtcctaacagagtggtgtattcttggcagGGACGCCTTGATCGCTTCTGTCCCGAGCTATGAGGAGCCTTATATTAAAGTTCCGAGGGTCTTAAGCATGGACTAAAGTTAAAATTGCTTAGACGAGTTA
tcctaac putative branch site (score: 1)
tattctt putative PPT
aaataattggaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttggttgttcattaatttgtcaattggaaataattggaaaacttatggtcctaacagagtggtgtattcttggcagGGACGCCTTGATCGCTTCTGTCCCGAGCTATGAGGAGCCTTATATTAAAGTTCCGAGGGTCTTAAGCATGGACTAAAGTTAAAATTGCTTAGACGAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA