1 5' 3' | 2 5' 3' | 3 5' 3' |
gtcttctttgctttctgttatttcattttctttcaaactattaatgtgctttttgttgtatatatttgaaatattaataaaaatgttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
species | Glycine max |
transcript | GLYMA20G31750.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATGEST: gi|208101027|gb|GD898148.1|GD898148
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATGEST: gi|254323066|gb|GR839979.1|GR839979
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATGEST: gi|208050888|gb|GD848953.1|GD848953
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
attaatgtgctttttgttgtatatatttgaaatattaataaaaatgttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
tattaat putative branch site (score: 2)
tttttgttgtatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttctttgctttctgttatttcattttctttcaaactattaatgtgctttttgttgtatatatttgaaatattaataaaaatgttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA