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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCAGAGCTTCTCATCAACCACCGCTTGCTCCTCTCTTCCACCCCCGGATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttgctttctgttatttcattttctttcaaactattaatgtgctttttgttgtatatatttgaaatattaataaaaatgttgttgcag

Basic information

species Glycine max
transcript GLYMA20G31750.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193348171|gb|FK309883.1|FK309883
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG                         GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|14991902|gb|BI317575.1|BI317575
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG                         GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|4299521|gb|AI442916.1|AI442916
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG                         GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|208101027|gb|GD898148.1|GD898148
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG                         GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|208158506|gb|GD957419.1|GD957419
EST:     CTCAAATTTCACTTACCCCAAACGAG                         GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: CTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|7326700|gb|AW620498.1|AW620498
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG                         GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|21887069|gb|BQ740282.1|BQ740282
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG                         GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|4306884|gb|AI443968.1|AI443968
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG                         GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|27424733|gb|CA936253.1|CA936253
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAATCGAG                         GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|208050888|gb|GD848953.1|GD848953
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG                         GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|21600904|gb|BQ611235.1|BQ611235
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAT                         GTTGTAGAAATTGCTCCCAAAATTTAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|298191719|gb|HO035801.1|HO035801
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG                         GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|31561311|gb|CD487149.1|CD487149
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG                         GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|192308363|gb|FK002791.1|FK002791
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG                         GTTGAAGAAATTGCTCCCAAGATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|120532246|gb|EH260379.1|EH260379
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG                         GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|6845801|gb|AW348091.1|AW348091
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG                         GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
EST: gi|10235113|gb|BE804001.1|BE804001
EST:     ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAG                         GTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG
genomic: ATTTGCCTCGTTTGGCAAAAACTGCTCAAATTTCACTTACCCCAAACGAGgtcttctttg ... gttgttgcagGTTGAAGAAATTGCTCCCAAAATTCAACAAGTTATAGAATG