1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatgtattcagttactcacctgctaaaatttctttcacgtctagattgatttttttttttttactgtagaagaatcttactagaacatagtttaactcttgctgagcaattttgtttttttaaatccgatgccagTTCTTCCTTCTCGTGTAACTGACCAATCTAGTGGGTATGGATCTCACTATAGTGGCAACAATTATGAATACAGCAGGAGAGCTTTTGGGGCAACATTGGA
species | Glycine max |
transcript | GLYMA20G31720.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTATCAACTCCTGATCGATTTTCAGATTATCCAGTAAATAATTCTCAAG TTCTTCCTTCTCGTGTAACTGACCAATCTAGTGGGTATGGATCTCACTATAEST: gi|207836619|gb|GD806616.1|GD806616
genomic: GCTATCAACTCCTGATCGATTTTCAGATTATCCAGTAAATAATTCTCAAGgtaatgtatt ... ccgatgccagTTCTTCCTTCTCGTGTAACTGACCAATCTAGTGGGTATGGATCTCACTATA
EST: TTTCAGATTATCCAGTAAATAATTCTCAAG TTCTTCCTTCTCGTGTAACTGACCAATCTAGTGGGTATGGATCTCACTTATEST: gi|31462177|gb|CD404205.1|CD404205
genomic: TTTCAGATTATCCAGTAAATAATTCTCAAGgtaatgtatt ... ccgatgccagTTCTTCCTTCTCGTGTAACTGACCAATCTAGTGGGTATGGATCTCACT-AT
EST: GCTATCAACTCCTGATCGATTTTCAGATTATCCAGTAAATAATTCTCAAG TTCTTCCTTCTCGTGTAACTGACCAATCTAGTGGGTATGGATCTCACTATA
genomic: GCTATCAACTCCTGATCGATTTTCAGATTATCCAGTAAATAATTCTCAAGgtaatgtatt ... ccgatgccagTTCTTCCTTCTCGTGTAACTGACCAATCTAGTGGGTATGGATCTCACTATA
tagaacatagtttaactcttgctgagcaattttgtttttttaaatccgatgccagTTCTTCCTTCTCGTGTAACTGACCAATCTAGTGGGTATGGATCTCACTATAGTGGCAACAATTATGAATACAGCAGGAGAGCTTTTGGGGCAACATTGGA
gtttaac putative branch site (score: 3)
agcaattttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtattcagttactcacctgctaaaatttctttcacgtctagattgatttttttttttttactgtagaagaatcttactagaacatagtttaactcttgctgagcaattttgtttttttaaatccgatgccagTTCTTCCTTCTCGTGTAACTGACCAATCTAGTGGGTATGGATCTCACTATAGTGGCAACAATTATGAATACAGCAGGAGAGCTTTTGGGGCAACATTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT