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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGCCTTTGCAGAATATGAAACTGAAGAGATTGCAGACTATGCTGTCCGGCTTTTTTCAGGCCTCATAACACTGTACAACAGAACACTTAAGTTTGCGgtgcgttcttgacatctctgctttcaatctgttcacaactagatatttttaatctttatttggaatcggtgcgttcttgacatctctgctttcaatctgt...

Basic information

species Glycine max
transcript GLYMA20G31720.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31720.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0109g00370.t01 (Vitis vinifera), 5'ss of exon 2
TTTTGCCTTTGCAGAATATGAAACTGAAGAGATTGCAGACTATGCTGTCCGGCTTTTTTCAGGCCTCATAACACTGTACAACAGAACACTTAAGTTTGCGgtgcgttcttgacatct-ctgctttcaatctgtt-cacaactagatatttttaatctttatttggaatcggtgcgtt-cttgacatctctgctttcaatctgt--
|| |||||| ||||||||||| || || || |||||||| |||||||||  |||||| || |||||  | ||| |||||||| |||| || || ||||||||| | | |||| || |  ||||||| |  |  | ||   ||||     | ||||   | |||||     |   ||| |  || ||   | | |  | | |    
TTATGCCTTCGCAGAATATGAGACAGAGGAAATTGCAGAATATGCTGTCAAGCTTTTCTCTGGCCTTGTGACATTGTACAACCGAACCCTGAAATTTGCGgtgagatgttgatatttattgctttctacttactacatccctag-----tctaattgctgtttggtgaatgcttgttgcaagaaatagttacctagattgtcatg

upper sequence: GLYMA20G31720.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0089g00220.t01 (Vitis vinifera), 5'ss of exon 2
TTTTGCCTTTGCAGAATATGAAACTGAAGAGATTGCAGACTATGCTGTCCGGCTTTTTTCAGGCCTCATAACACTGTACAACAGAACACTTAAGTTTGCGgtgcgttcttgacatctctgctttcaatctgttcacaactagatatt--tttaatctttatttgg-aatcggtgcgtt--cttgacatctctgctttcaatctgt
|||||||||||| |||||||| || || || |||||||| |||||||||  ||| || || |||||  | |||||||||||  ||||||| || ||||||||| |  ||    |||| |   ||| |  |  |  | | |||    |  | ||||   | || || ||  |    |||  || || ||   | | |  | |    
TTTTGCCTTTGCTGAATATGAGACCGAGGAAATTGCAGATTATGCTGTCAAGCTATTCTCTGGCCTTGTGACACTGTACAATCGAACACTGAAATTTGCGgtgagacctcatgatctgttgcttctacttcctagcta-tagtccctagtctaattgcttttgggtaaatgccttgtttgctagaaatggttacctagatt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26269320|gb|CA820383.1|CA820383
EST:     ACTTAAGTTTGCG                         ATGCTTCCAAGTATCCAACCATACATTGGGACATCATATAACAGGGGCTTC
genomic: ACTTAAGTTTGCGgtgcgttctt ... gaaccttgagATGCTTCCAAGTATCCAACCATACATTGGGACATCATATAACAGGGGCTTC