1 5' 3' | 2 5' 3' | 3 5' 3' |
gttagaatacatagtaaacacctaactatatgcatctaatctcattgttaaggtggtaactcttaatttttctgtccttgatgatattgttgtagGCTGTATGCCACAATTGGTCAGACGAAAAATGCATAGAATTTCTGAGGAATTGTCACAAAGCATTGTCTCCAAATGGGAAGGTGATTGTGGTGGAGTTCA
species | Glycine max |
transcript | GLYMA20G31700.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGCGATATGTTTGCAAGAGTTCCACAGGGTGACGCCATAATACTGAAG GCTGTATACCACAATTGGTCAGACGAAAAATGCATAGAATTTCTGAGGAATEST: gi|193726182|gb|FK656458.1|FK656458
genomic: GAGGGGATATGTTCGCAAAAGTTCCACAGGGTGACACCATAATACTAAAGgttagaatac ... attgttgtagGCTGTATGCCACAATTGGTCAGACGAAAAATGCATAGAATTTCTGAGGAAT
EST: GAGGGGATATGTTCGCAAAAGTTCCACAGGGCGACACCATAATACTAAAG GCTGTATGCCACAATTGGTCAGAACGAAAAATGCATAGAATTTCTGAGGAA
genomic: GAGGGGATATGTTCGCAAAAGTTCCACAGGGTGACACCATAATACTAAAGgttagaatac ... attgttgtagGCTGTATGCCACAATTGGTCAGA-CGAAAAATGCATAGAATTTCTGAGGAA
ctcattgttaaggtggtaactcttaatttttctgtccttgatgatattgttgtagGCTGTATGCCACAATTGGTCAGACGAAAAATGCATAGAATTTCTGAGGAATTGTCACAAAGCATTGTCTCCAAATGGGAAGGTGATTGTGGTGGAGTTCA
taactcttaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagaatacatagtaaacacctaactatatgcatctaatctcattgttaaggtggtaactcttaatttttctgtccttgatgatattgttgtagGCTGTATGCCACAATTGGTCAGACGAAAAATGCATAGAATTTCTGAGGAATTGTCACAAAGCATTGTCTCCAAATGGGAAGGTGATTGTGGTGGAGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG