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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcctattatagtgttttatgacaaatatatcaaaatattaaatgatatgatacttctactttcagttttaaactttgtcaaattactaatcagaaaaaaccaaattttgtaagGGATTGAGCATGTTGGAGGGGATATGTTCGCAAAAGTTCCACAGGGTGACACCATAATACTAAAG

Basic information

species Glycine max
transcript GLYMA20G31700.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22523847|gb|BU082658.1|BU082658
EST:     AATTAACTTTGATCTTCCCCAAGTGATTGAAAATGCACCACCCCTTCCAG                         GGATTGAGCATGTTGGAGGCGATATGTTTGCAAGAGTTCCACAGGGTGACG
genomic: AATTAATTTTGATCTTCCCCAAGTGATTGAAAATGCACTTCCCCTTCCAGgtagcctatt ... attttgtaagGGATTGAGCATGTTGGAGGGGATATGTTCGCAAAAGTTCCACAGGGTGACA
EST: gi|193726182|gb|FK656458.1|FK656458
EST:     AATTAATTTTGATCTTCCCCAAGTGATTGAAAATGCACTTCCCCTTCCAG                         GGATTGAGCATGTTGGAGGGGATATGTTCGCAAAAGTTCCACAGGGCGACA
genomic: AATTAATTTTGATCTTCCCCAAGTGATTGAAAATGCACTTCCCCTTCCAGgtagcctatt ... attttgtaagGGATTGAGCATGTTGGAGGGGATATGTTCGCAAAAGTTCCACAGGGTGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcagttttaaactttgtcaaattactaatcagaaaaaaccaaattttgtaagGGATTGAGCATGTTGGAGGGGATATGTTCGCAAAAGTTCCACAGGGTGACACCATAATACTAAAG
                         tactaat  putative branch site (score: 1)
                                   aaaaaaccaaatttt  TA-rich tract