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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCTTGGGACATACAAGgtatatatattagttatcacaatgcaattatctagctagacacatgttctcttaaaggggcctaataataatctttaagtaattataatataattcaaaa...

Basic information

species Glycine max
transcript GLYMA20G31550.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31550.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G71930.1 (Arabidopsis thaliana), 5'ss of exon 1
GTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCTTGGGACATACAAGgtatatatattagttatcacaatgcaattatctagctagacacatgtt--ctcttaaaggggcctaataataatctttaagtaattataatataattcaaaa
||||| ||||||||  | |||||||| || ||  | || |  | | ||||||| ||||| ||||||||||||||||||||||| || ||||| ||||||||||  ||||||| | | |          |||   | |   ||    ||    |||     ||  | | | |||   ||   || |||| | |||| |    |
GTGGGTTATTACCTAGATAGGAAGATCAATTCAATGAAGAGTGCTTTAGATGTCATTGTAGAGATTGATCTCTACAAAATGGAGCCATGGGATATACAAGgtaattatattaatcaacgtggattttgtataatgattatcattgattaatcctttgcatggaatgacagtaa--attgtctagttatgacataagttttga

upper sequence: GLYMA20G31550.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0072g01060.t01 (Vitis vinifera), 5'ss of exon 1
GTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCTTGGGACATACAAGgtatatat--attagttatcacaatgcaatt--atctagctagacacatgttctcttaaaggggcctaataataatctttaagtaattataatataattcaaaa--
||||  |||||||||||||||||||| ||||| || ||||| ||||||||||||||| | || || ||||||||||  ||||| || |||||||| |||||||   ||   ||   |||   |||| ||    | |    ||||   | |     ||||  | || |  |  |||  |  | ||  || |  |  | ||  ||   
GTGGATTATTACCTCAAGAGGAAGATCAACTCTCTTAAAATTGATCTAGATGTTATTATCGAAATCGATCTCTACAGGATGGAGCCATGGGACATCCAAGgtactaattagttcaatatacaaatggaaaagaaacatcgtagatttaagaagaattaatagagcttt-tgttaacatagatgtggttttggttcatttgtaacag