1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGTCTAGACCCTAAAGTAATTGTCTTCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagctctgcttttacttgtgcaatcaaattatttatcaaatattatgaaattaaaatgtcagttttcaatgcttggaagtagttgggaattact...
species | Glycine max |
transcript | GLYMA20G31530.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|10844913|gb|BF068103.1|BF068103
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|31467392|gb|CD409420.1|CD409420
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|193427199|gb|FK393449.1|FK393449
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|7686527|gb|AW757175.1|AW757175
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|20811757|gb|BQ296235.1|BQ296235
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATEST: gi|23057465|gb|BU578139.1|BU578139
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTAT
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|6482536|gb|AW201793.1|AW201793
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCANATATAAGAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG NCAAATACACGTATACCGGATAA-TAGCATTATGGGCTATGAAAACTACCCEST: gi|58021654|gb|CX708395.1|CX708395
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATAC-GGATAAATAGCATTATGGGCTATGAAAACTACCC
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|7041680|gb|AW471521.1|AW471521
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: CAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAAG C-AAATACACGTGTACGGATEST: gi|6727136|gb|AW311490.1|AW311490
genomic: CAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACA-Ggtactagagc ... catgtgacagCCAAATACACGTATACGGAT
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|213595229|gb|DB962368.1|DB962368
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAANAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCEST: gi|18041202|gb|BM309496.1|BM309496
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACC
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTEST: gi|120531050|gb|EH259183.1|EH259183
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATT
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|6913237|gb|AW394767.1|AW394767
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|192314356|gb|FK008382.1|FK008382
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGCATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|19270148|gb|BM886404.1|BM886404
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|10843966|gb|BF070885.1|BF070885
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGEST: gi|209706771|gb|BW678140.1|BW678140
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATG
EST: AAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|192314357|gb|FK008383.1|FK008383
genomic: AAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGCATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|193359983|gb|FK327175.1|FK327175
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|20811579|gb|BQ296057.1|BQ296057
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|31467085|gb|CD409113.1|CD409113
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|20449003|gb|BQ253127.1|BQ253127
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|31467447|gb|CD409475.1|CD409475
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCTEST: gi|20812116|gb|BQ296594.1|BQ296594
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|10710505|gb|BF010223.1|BF010223
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGATAACTACCCAEST: gi|7796758|gb|AW782152.1|AW782152
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCEST: gi|6913271|gb|AW394801.1|AW394801
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGC
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAEST: gi|20448527|gb|BQ252651.1|BQ252651
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATEST: gi|20207519|gb|BQ133608.1|BQ133608
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTAT
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGEST: gi|11687669|gb|BF595345.1|BF595345
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGG
EST: TCAAATATAANAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATTCGGATAAATAGCATTATGGGCTATGAAAACTACEST: gi|10233317|gb|BE802205.1|BE802205
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTAC
EST: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAG CCAAATACACGTATACGGATAAATAGCATTATGGGCTATGANAACTACCCA
genomic: TCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagc ... catgtgacagCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCTAGACCCTAAAGTAATTGTCTTCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGgtactagagctctgcttttacttgtgcaatcaaattatttatcaaatattatgaaattaaaatgtcagttttcaatgcttggaagtagttgggaattact
- - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaaa