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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCTCAGATCTTAAGTCTGGAAAGATAGTGACACCTTTACCTCCAAAGGCCACATTTCTTGATGATCCGTTACGAGTTCTTCGAGCCATTAGATTTGgtatattctaattttggtgatcagtttattttagtttctcttgtgaatattttgtcctatgctttcttttgaagtttgaacttgttctcctgctatattgaagatacattttcattatttttag

Basic information

species Glycine max
transcript GLYMA20G31440.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31440.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0075g00880.t01 (Vitis vinifera), 5'ss of exon 6
GCATCTCAGATCTTAAGTCTGGAAAGATAGTGACACCTTTACCTCCAAAGGCCACATTTCTTGATGATCCGTTACGAGTTCTTCGAGCCATTAGATTTGgtatattcta-attttggtgatcagtttattttagtttctcttgtgaatattttgtcctatgctttcttttgaagtttgaacttgttctcctgctatattgaagatacattttcattatttttag
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GCATTGAGGATCTGAAGTCTGGAAAAATAGTTACACCATTACCTCCAAAGGATACATTTTTAGATGATCCCCTACGAGTTCTTCGGGCTATCCGTTTCGgtacttttgatactctgttaatttatttgcttgctctagtcataagataaagttg----atgtttctctttctaaaataaagagaattaaatattaggaaaagg---------------------