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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcacactccttcaacaataatgcctagccctaattctttttcttctctctttttgtcattggttctgttctgttctgcagCTTCTGGGAAAAGAGTGCTATGACATTGATATCGCTCTCGACAATATGATGGGAACTGAGTTTGTGGATAAGGTTAGGGAGTACTTGTTGTCCATTGGCG

Basic information

species Glycine max
transcript GLYMA20G31440.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213620115|gb|DB965407.1|DB965407
EST:     TCCACCTCCAAACTCAGCTCCGAGTCGCCGGTGGCTGGGTCCGCGACAAG                         CTTCTGGGAAAAGAGTGCTATGACATTGATATCGCTCTCGACAATATGATG
genomic: TCCACCTCCAAACTCAGCTCCGAGTCGCCGGTGGCTGGGTCCGCGACAAGgtcacactcc ... tgttctgcagCTTCTGGGAAAAGAGTGCTATGACATTGATATCGCTCTCGACAATATGATG
EST: gi|213604868|gb|DB956153.1|DB956153
EST:     TCCACCTCCAAACTCAGCTCCGAGTCGCCGGTGGCTGGGTCCGCGACAAG                         CTTCTGGGAAAAGAGTGCTATGACATTGATATCGCTCTCGACAATATGATG
genomic: TCCACCTCCAAACTCAGCTCCGAGTCGCCGGTGGCTGGGTCCGCGACAAGgtcacactcc ... tgttctgcagCTTCTGGGAAAAGAGTGCTATGACATTGATATCGCTCTCGACAATATGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agccctaattctttttcttctctctttttgtcattggttctgttctgttctgcagCTTCTGGGAAAAGAGTGCTATGACATTGATATCGCTCTCGACAATATGATGGGAACTGAGTTTGTGGATAAGGTTAGGGAGTACTTGTTGTCCATTGGCG
  ccctaat  putative branch site (score: 3)
        ttctttttcttctctc  CT-rich tract
     taattctttttctt  TA-rich tract