Sequence
atgc intronic sequence ATGC exonic sequenceCTTACCGTCCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAGTGGCTTGTTCCTATTGCAGCCAACACAACGAAgtatatttgctaaccccctactcagaaattcctagatttcctagtgttgcatttggtacaacaattttgtttaaatttgcttttcattatggtcaataat...
Basic information
species | Glycine max |
transcript | GLYMA20G31400.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G31400.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 5'ss of exon 11
CTTACCGTCCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAGTGGCTTGTTCCTATTGCAGCCAACACAACGAAgta-tatttgctaaccccctactcagaaattcctagatttcctagtgttgcatttggtacaacaattttgttta-aatttgcttttcattatggtcaataat
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CTTACAGCTTCTCAAATCAAAGCTGAAATGGAGAAGACTTTGCGATGGCTTGTCCCTATTGCAAATAATACAACGAAgtaatatatcctatccttgcatgcctgtgacctca--ttacttacaattgcaaaaactatccatttcttactgagaatatgattgtctgttcaccccag---
upper sequence: GLYMA20G31400.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G34320.1 (Arabidopsis thaliana), 5'ss of exon 11
CTTACCGTCCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAGTGGCTTGTTCCTATTGCAGCCAACACAACGAAgtatatttgctaaccccctactcagaaattcctagatttcctagtgttgcatttggtacaacaattttgtttaaatt-tgcttttcattatggtcaataat
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CTCACTGTTCCTCAAATAAAAGCTGAAATGGAAAAAACATTGCAGTGGCTTGTTCCTGTTGCTACAAACACCACCAAgtaagctt-ctgtgatgttttctatctctttatctttggttttgtgtcatcattagaactctgttctcacttaaatcatgtatttttttttggcggatcaa
upper sequence: GLYMA20G31400.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 10
CTTACCGTCCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAGTGGCTTGTTCCTATTGCAGCCAACACAACGAAgtatatttgctaaccccctactcagaaattcctagatttcctagtgttgcatttggtacaacaattttgtttaaatttgcttttca--ttatggtcaataat
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CTTACCATTCCACAAATCAAAGCTGAAATGGAGAAAACTTTGCATTGGCTTGTGCCTATTGCCGCCAACACAACCAAgtaaaactgccaatcttc-acaaacaactattttattgggatgtaactacatctggtaccccattttacagtttgcttgctttcccatttatggtttgtaa-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193385525|gb|FK349865.1|FK349865EST: ATGGAGAAAATATTGCAGTGGCTTGTTCCTATTGCAGCCAACACAACGAA AGCTCATCATGGCTTTGGATGGGTTGGAGAATGGGCTAACACAGG
genomic: ATGGAGAAAATATTGCAGTGGCTTGTTCCTATTGCAGCCAACACAACGAAgtatatttgc ... attaattcagAGCTCATCATGGCTTTGGATGGGTTGGAGAATGGGCTAACACAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTACCGTCCCACAAATCAAAGCTGAAATGGAGAAAATATTGCAGTGGCTTGTTCCTATTGCAGCCAACACAACGAAgtatatttgctaaccccctactcagaaattcctagatttcctagtgttgcatttggtacaacaattttgtttaaatttgcttttcattatggtcaataat
- - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccccc