Sequence
atgc intronic sequence ATGC exonic sequence...aagatttcaatgattcctttcccttcgcgtgtattttcttccacactgcaaaataccatgttagttagctcagtctaatttgagattttaattgttgcagAAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTCATGCAATGTTGCTCATGCTACACAGAAGTTGGAGCTTCTGCTGGCATAA
Basic information
species | Glycine max |
transcript | GLYMA20G31230.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209696623|gb|BW660400.1|BW660400EST: CGTTACTATCTGCAAATTTCTCGTGGGAGTGCTTCTATTAGCTAAGTTTG AAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
genomic: CGTTACTATCTGCAAATTTCTCGTGGGAGTGCTTCTATTAGCTAAGTTTGgtatacccat ... attgttgcagAAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
EST:
gi|209722297|gb|BW665807.1|BW665807EST: CGTTACTATCTGCAAATTTCTCGTGGGAGTGCTTCTATTAGCTAAGTTTG AAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
genomic: CGTTACTATCTGCAAATTTCTCGTGGGAGTGCTTCTATTAGCTAAGTTTGgtatacccat ... attgttgcagAAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgcaaaataccatgttagttagctcagtctaatttgagattttaattgttgcagAAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTCATGCAATGTTGCTCATGCTACACAGAAGTTGGAGCTTCTGCTGGCATAA
ttttaat putative branch site (score: 3)
taatttgagattttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagatttcaatgattcctttcccttcgcgtgtattttcttccacactgcaaaataccatgttagttagctcagtctaatttgagattttaattgttgcagAAAAGTTCAAAGTATCACACTAAAAGAAATGTCAATGGCAATTCCGGAGTCATGCAATGTTGCTCATGCTACACAGAAGTTGGAGCTTCTGCTGGCATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - ctttccc
- - - - - - - - - - - - - gcgtgta
- - - - - - - - - - - - - - - - - - - - ccacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgtt