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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattcaactctcctatgctttccgttctatcaaagtccgcttcacacttgttgtttcaattttccaatcttgtagGACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGGTCTGGGTAAGCGTTACTATCTGCAAATTTCTCGTGGGAGTGCTTCTATT

Basic information

species Glycine max
transcript GLYMA20G31230.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209696623|gb|BW660400.1|BW660400
EST:     ATGCGGGAATCAGTG                         GACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGG
genomic: ATGCGGGAATCAGTGgtaagtattc ... aatcttgtagGACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGG
EST: gi|209722297|gb|BW665807.1|BW665807
EST:     ATGCGGGAATCAGTG                         GACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGG
genomic: ATGCGGGAATCAGTGgtaagtattc ... aatcttgtagGACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgttctatcaaagtccgcttcacacttgttgtttcaattttccaatcttgtagGACGGCAATGCAAGCCTTCAATATTCAAACCAAGCAATTTTGGCTTTAGGGTCTGGGTAAGCGTTACTATCTGCAAATTTCTCGTGGGAGTGCTTCTATT
                                       ttttcca  CT-rich tract
                                 tttcaatttt  TA-rich tract