1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTTCTACGCAGGCAGAGCTCCTAGTGGTGAGCGGACTGATTGGGTTATGCATGAATACACCTTGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAGgtatcacttaatttgccattttttgcttcaattttcttgatttgttgttttcttactcattttgatcatgagaagagtactatttactgacctttgggttttgatataaattcatcatcag
species | Glycine max |
transcript | GLYMA20G31210.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATGAATACACCTTGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAG GACTATTATGCACTTTACAAGGTTTACAAGAAAAGTGGACCTGGTCCTAAAEST: gi|254324747|gb|GR834172.1|GR834172
genomic: ATGAATACACCTTGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAGgtatcactta ... tcatcatcagGACTATTATGCACTTTACAAGGTTTACAAGAAAAGTGGACCTGGTCCTAAA
EST: ATGAATACACCTTGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAG GACTATTATGCACTTTACAAGGTTTACAAGAAAAGTGGACCTGGTCCTAAAEST: gi|254339826|gb|GR857951.1|GR857951
genomic: ATGAATACACCTTGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAGgtatcactta ... tcatcatcagGACTATTATGCACTTTACAAGGTTTACAAGAAAAGTGGACCTGGTCCTAAA
EST: ATGAATACACCTTGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAG GACTATTATGCACTTTACAAGGTTTACAAGAAAAGTGGACCTGGTCCTAAAEST: gi|18040517|gb|BM308811.1|BM308811
genomic: ATGAATACACCTTGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAGgtatcactta ... tcatcatcagGACTATTATGCACTTTACAAGGTTTACAAGAAAAGTGGACCTGGTCCTAAA
EST: ATGAATACACCTTGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAG GACTATTATGCACTTTACAAGGTTTACAAGAAAAGTGGACCTGGTCCTAAA
genomic: ATGAATACACCTTGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAGgtatcactta ... tcatcatcagGACTATTATGCACTTTACAAGGTTTACAAGAAAAGTGGACCTGGTCCTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTACGCAGGCAGAGCTCCTAGTGGTGAGCGGACTGATTGGGTTATGCATGAATACACCTTGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAGgtatcacttaatttgccattttttgcttcaattttcttgatttgttgttttcttactcattttgatcatgagaagagtactatttactgacctttgggttttgatataaattcatcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG