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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgattcgtaccatgtagttgtgggatttcggctttgccacttcttgattccaataattttggtttctttttttcccctaatttgatttccccagTTAGGGTTTTTAACTCTATTCGATCGGCGATTTCGAATACTCGGAGGCTCGAATCGTGTTGGGGGTTTTCCGTTTTGATTAAAAAAGTTTCCGTTTTTTG

Basic information

species Glycine max
transcript GLYMA20G31210.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213619509|gb|DB957238.1|DB957238
EST:     TCTAGTTTTTTCGTTCCGCGACTCAGCCTTTCGAATCCTCTCACCCAGAG                         TTAGGGTTTTTAACTCTATTCGATCGGCGATTTCGAATACTCGGAGGCTCG
genomic: TCTAGTTTTTTCGTTCCGCGACTCAGCCTTTCGAATCCTCTCACCCAGAGgtacgattcg ... atttccccagTTAGGGTTTTTAACTCTATTCGATCGGCGATTTCGAATACTCGGAGGCTCG
EST: gi|209719081|gb|BW674869.1|BW674869
EST:     TCTAGTTTTTTCGTTCCGCGACTCAGCCTTTCGAATCCTCTCACCCAGAG                         TTAGGGTTTTTAACTCTATTCGATCGGCGATTTCGAATACTCGGAGGCTCG
genomic: TCTAGTTTTTTCGTTCCGCGACTCAGCCTTTCGAATCCTCTCACCCAGAGgtacgattcg ... atttccccagTTAGGGTTTTTAACTCTATTCGATCGGCGATTTCGAATACTCGGAGGCTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcttgattccaataattttggtttctttttttcccctaatttgatttccccagTTAGGGTTTTTAACTCTATTCGATCGGCGATTTCGAATACTCGGAGGCTCGAATCGTGTTGGGGGTTTTCCGTTTTGATTAAAAAAGTTTCCGTTTTTTG
                       tttctttttttcccct  CT-rich tract
            aataattttggtttct  TA-rich tract