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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCATCGACCAAGCAAAATCTGAGGTGGAGAAAGTATGTCCCGGGGTTGTGTCATGCGCTGACATTGTAGCAGTAGCAGCACGTGATGCATCATTTGCCgtaagtcacagtaacaaactaactagctatatatatacgttaatttcaacttaataattaacatgcagaagctatataatgagttatgcatttattttaattattgattag

Basic information

species Glycine max
transcript GLYMA20G31190.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19936242|gb|BQ080782.1|BQ080782
EST:     CTGACATTGTAGCAGTAGCAGCACGTGATGCATCATTTGCC                         GTGGGTGGTCCATCATGGACTGTGAAGCTTGGACGAAGAGATTCTACCACT
genomic: CTGACATTGTAGCAGTAGCAGCACGTGATGCATCATTTGCCgtaagtcaca ... tattgattagGTGGGTGGTCCATCATGGACTGTGAAGCTTGGACGAAGAGATTCTACCACT
EST: gi|51344294|gb|CO985027.1|CO985027
EST:     TGTCATGCGCTGACATTGTAGCAGTAGCAGCACGTGATGCATCATTTGCC                         GTGGGTGGTCCATCATGGACTGTGAAGCTTGGACGAAGAGATTCTACCACT
genomic: TGTCATGCGCTGACATTGTAGCAGTAGCAGCACGTGATGCATCATTTGCCgtaagtcaca ... tattgattagGTGGGTGGTCCATCATGGACTGTGAAGCTTGGACGAAGAGATTCTACCACT
EST: gi|51344354|gb|CO985087.1|CO985087
EST:     GCAGTAGCAGCACGTGATGCATCATTTGCC                         GTGGGTGGTCCATCATGGACTGTGAAGCTTGGACGAAGAGATTCTACCACT
genomic: GCAGTAGCAGCACGTGATGCATCATTTGCCgtaagtcaca ... tattgattagGTGGGTGGTCCATCATGGACTGTGAAGCTTGGACGAAGAGATTCTACCACT