1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtcacagtaacaaactaactagctatatatatacgttaatttcaacttaataattaacatgcagaagctatataatgagttatgcatttattttaattattgattagGTGGGTGGTCCATCATGGACTGTGAAGCTTGGACGAAGAGATTCTACCACTGCAAGCAAAAGTTCGGCTACTAGTGACCTTCCACGATTCACAGACGATC
species | Glycine max |
transcript | GLYMA20G31190.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGACATTGTAGCAGTAGCAGCACGTGATGCATCATTTGCC GTGGGTGGTCCATCATGGACTGTGAAGCTTGGACGAAGAGATTCTACCACTEST: gi|51344294|gb|CO985027.1|CO985027
genomic: CTGACATTGTAGCAGTAGCAGCACGTGATGCATCATTTGCCgtaagtcaca ... tattgattagGTGGGTGGTCCATCATGGACTGTGAAGCTTGGACGAAGAGATTCTACCACT
EST: TGTCATGCGCTGACATTGTAGCAGTAGCAGCACGTGATGCATCATTTGCC GTGGGTGGTCCATCATGGACTGTGAAGCTTGGACGAAGAGATTCTACCACTEST: gi|51344354|gb|CO985087.1|CO985087
genomic: TGTCATGCGCTGACATTGTAGCAGTAGCAGCACGTGATGCATCATTTGCCgtaagtcaca ... tattgattagGTGGGTGGTCCATCATGGACTGTGAAGCTTGGACGAAGAGATTCTACCACT
EST: GCAGTAGCAGCACGTGATGCATCATTTGCC GTGGGTGGTCCATCATGGACTGTGAAGCTTGGACGAAGAGATTCTACCACT
genomic: GCAGTAGCAGCACGTGATGCATCATTTGCCgtaagtcaca ... tattgattagGTGGGTGGTCCATCATGGACTGTGAAGCTTGGACGAAGAGATTCTACCACT
attaacatgcagaagctatataatgagttatgcatttattttaattattgattagGTGGGTGGTCCATCATGGACTGTGAAGCTTGGACGAAGAGATTCTACCACTGCAAGCAAAAGTTCGGCTACTAGTGACCTTCCACGATTCACAGACGATC
tatataatgagttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcacagtaacaaactaactagctatatatatacgttaatttcaacttaataattaacatgcagaagctatataatgagttatgcatttattttaattattgattagGTGGGTGGTCCATCATGGACTGTGAAGCTTGGACGAAGAGATTCTACCACTGCAAGCAAAAGTTCGGCTACTAGTGACCTTCCACGATTCACAGACGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA