Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAAGGGGAAATAGATTATGTTGGGGTGCTAAATCGAGTCCTTCCAAATGACATTAGGATTATGGGCTGGTGTCCTGCTCCTGTTGATTTCCATGCAAGgtttgtatgcattctttaaaactttgccttcttatatgatgattgaattatacagagaataatgattgcaataagcaatgctagacaagggaactacttt...

Basic information

species Glycine max
transcript GLYMA20G31160.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31160.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g01990.t01 (Vitis vinifera), 5'ss of exon 8
TAGAAGGGGAAATAGATTATGTTGGGGTGCTAAATCGAGTCCTTCCAAATGACATTAGGATTATGGGCTGGTGTCCTGCTCCTGTTGATTTCCATGCAAGgtttgtatgcattctttaaaactttgccttcttatatgatgattgaattata-cagagaataatgatt--gcaataagcaatgctagacaagggaactacttt
   |||| ||||| |||||| |  |||| || ||| |||||||||| || || ||| |  |||||||||||||||||| |||  ||| |||||||||||||||||| |   |||   | |  |     | ||  | |  |       ||  | |  | ||| |||||   |   || |     ||||     |  |  |    
---AAGGAGAAATTGATTATATGAGGGTACTCAATAGAGTCCTTCCTAAAGATATTCGAGTTATGGGCTGGTGTCCTGTTCCAATTGGTTTCCATGCAAGgtttgtctatcttcacaatatttccctgtcctcttttttttccccttttggatctaacaatgatgatcaagttgtatgtctatctaggttttgccaaaag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336534|gb|CO980400.1|CO980400
EST:     GACATTAGGATTATGGGCTGGTGTCCTGCTCCTGTTGATTTCCATGCAAG                         GTTCAGCTGTTTAAGCAGGGAGTATAAATATTTCTTTTGGAAAGAAAACTT
genomic: GACATTAGGATTATGGGCTGGTGTCCTGCTCCTGTTGATTTCCATGCAAGgtttgtatgc ... gtcaatacagGTTCAGCTGTTTAAGCAGGGAGTATAAATATTTCTTTTGGAAAGAAAACTT