1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttttgcaataaatttaatttaactctttacttaatgaagcttgatatcttaaattattctattttcttatcatgttccatgtttgctttgtcaatacagGTTCAGCTGTTTAAGCAGGGAGTATAAATATTTCTTTTGGAAAGAAAACTTGAACATCCCG
species | Glycine max |
transcript | GLYMA20G31160.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACATTAGGATTATGGGCTGGTGTCCTGCTCCTGTTGATTTCCATGCAAG GTTCAGCTGTTTAAGCAGGGAGTATAAATATTTCTTTTGGAAAGAAAACTT
genomic: GACATTAGGATTATGGGCTGGTGTCCTGCTCCTGTTGATTTCCATGCAAGgtttgtatgc ... gtcaatacagGTTCAGCTGTTTAAGCAGGGAGTATAAATATTTCTTTTGGAAAGAAAACTT
tatcttaaattattctattttcttatcatgttccatgtttgctttgtcaatacagGTTCAGCTGTTTAAGCAGGGAGTATAAATATTTCTTTTGGAAAGAAAACTTGAACATCCCG
ctttgtc CT-rich tract
taaattattctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttgcaataaatttaatttaactctttacttaatgaagcttgatatcttaaattattctattttcttatcatgttccatgtttgctttgtcaatacagGTTCAGCTGTTTAAGCAGGGAGTATAAATATTTCTTTTGGAAAGAAAACTTGAACATCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
-ttttgca
- - - - - - - - - - - - - - - - -aatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc