1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tatgccatatttatacttctgctttagtgttagttaattccctgaagaatgctctgtaatcttgaattcagcaattttgtgaccattaatactgctgcagTTTATTGGAAATGTGCACGGTGATGAACCTGTGGGACGTGAGCTGCTTATATTTTTGGCCAATTGGTTATGTGATAACCATTTGAAGGATCCTTTG
species | Glycine max |
transcript | GLYMA20G31000.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAGAAATTTCTGACAAGCCAGGAGAAGAAGAGACTGAACCTGCATTTAAG TTTATTGGAAATGTGCACGGTGATGAACCTGTGGGACGTGAGCTGCTTATAEST: gi|192301522|gb|FG994762.1|FG994762
genomic: TAGAAATTTCTGACAAGCCAGGAGAAGAAGAGACTGAACCTGCATTTAAGgtgagtgttt ... actgctgcagTTTATTGGAAATGTGCACGGTGATGAACCTGTGGGACGTGAGCTGCTTATA
EST: TAGAAATTTCTGACAAGCCAGGAGAAGAAGAGACTGAACCTGCATTTAAG TTTATTGGAAATGTGCACGGTGATGAACCTGTGGGACGTGAGCTGCTTATA
genomic: TAGAAATTTCTGACAAGCCAGGAGAAGAAGAGACTGAACCTGCATTTAAGgtgagtgttt ... actgctgcagTTTATTGGAAATGTGCACGGTGATGAACCTGTGGGACGTGAGCTGCTTATA
agaatgctctgtaatcttgaattcagcaattttgtgaccattaatactgctgcagTTTATTGGAAATGTGCACGGTGATGAACCTGTGGGACGTGAGCTGCTTATATTTTTGGCCAATTGGTTATGTGATAACCATTTGAAGGATCCTTTG
cattaat putative branch site (score: 3)
attaatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgccatatttatacttctgctttagtgttagttaattccctgaagaatgctctgtaatcttgaattcagcaattttgtgaccattaatactgctgcagTTTATTGGAAATGTGCACGGTGATGAACCTGTGGGACGTGAGCTGCTTATATTTTTGGCCAATTGGTTATGTGATAACCATTTGAAGGATCCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
tatgcca
- - - - - - - -cttctgc
- - - - - - - - - - - - - - - - - - - -ccctgaa
- - - - - - - - - - - - - - - - - - - - - - - gaatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccattaa