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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAGgtattctaatataattcaaattatctttttatagtatggattgaagcctaccttgaagattttctgaaataattaaatgataaaaattaaattctcatga...

Basic information

species Glycine max
transcript GLYMA20G31000.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51334808|gb|CO978674.1|CO978674
EST:     AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAG                         TAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG
genomic: AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAGgtattctaat ... taaattgcagTAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG
EST: gi|207817922|gb|GD791885.1|GD791885
EST:     AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAG                         TAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG
genomic: AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAGgtattctaat ... taaattgcagTAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG
EST: gi|57575392|gb|CX548367.1|CX548367
EST:     AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAG                         TAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG
genomic: AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAGgtattctaat ... taaattgcagTAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG
EST: gi|58025229|gb|CX711970.1|CX711970
EST:     AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAG                         TAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG
genomic: AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAGgtattctaat ... taaattgcagTAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG
EST: gi|192301523|gb|FG994763.1|FG994763
EST:     AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAG                         TAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG
genomic: AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAGgtattctaat ... taaattgcagTAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG
EST: gi|193508896|gb|FK465492.1|FK465492
EST:     AACTTTTGGTGACTATCGTCGCATACTCGCCCCAAGAGATAAATATGAAG                         TAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG
genomic: AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAGgtattctaat ... taaattgcagTAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG
EST: gi|207690830|gb|GD672538.1|GD672538
EST:     AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAG                         TAGTGGCAACCATGCCGGG
genomic: AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAGgtattctaat ... taaattgcagTAGTGGCAACCATGCCGGG
EST: gi|193483488|gb|FK450155.1|FK450155
EST:     AACTTTTGGTGACTATCATCGCATACTCGTCCCAAGAGATAAATATGAAG                         TAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG
genomic: AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAGgtattctaat ... taaattgcagTAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG
EST: gi|57575090|gb|CX548065.1|CX548065
EST:     AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAG                         TAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG
genomic: AACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAGgtattctaat ... taaattgcagTAGTGGCAACCATGCCGGGCTACAAATCAAAGAATACAACTATTTGGTTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTAGAGCTGGAAAAACTTTTGGTGACTATCATCGCATACTCGCCCCAAGAGATAAATATGAAGgtattctaatataattcaaattatctttttatagtatggattgaagcctaccttgaagattttctgaaataattaaatgataaaaattaaattctcatga

- - - - - - - - - - - - - - - - - - - - - - -  AAGAGA