Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaggaaagtttacaaccaataattttttttttttgtttacatgctttattaccttcttgtaattgattcaatacgatgcaatttgtcattcaactgcagTGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTGTTCCTGTGCGATTATGTAAATTGGAGTTTCATTAAGTTGATAGGTTCAT

Basic information

species Glycine max
transcript GLYMA20G30950.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412404|gb|EV282216.1|EV282216
EST:     ACAGATAATTGTGGTAGTGAGCTTGTTGAA-TTC-AGA-TTTGAGCCCAG                         TGA-GTGGATGGATCGGATGATGAATTTGATAGTGGAA-TGACAGAAC
genomic: ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAGgtatttgaat ... tcaactgcagTGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAAC
EST: gi|254331514|gb|GR843471.1|GR843471
EST:     ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAG                         TGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTG
genomic: ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAGgtatttgaat ... tcaactgcagTGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTG
EST: gi|254318243|gb|GR832411.1|GR832411
EST:     ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAG                         TGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTG
genomic: ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAGgtatttgaat ... tcaactgcagTGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTG
EST: gi|151410467|gb|EV280282.1|EV280282
EST:     ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAG                         TGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGA-CTTG
genomic: ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAGgtatttgaat ... tcaactgcagTGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTG
EST: gi|254318244|gb|GR832412.1|GR832412
EST:     ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAG                         TGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTG
genomic: ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAGgtatttgaat ... tcaactgcagTGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTG
EST: gi|151411129|gb|EV280940.1|EV280940
EST:     ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAG                         TGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTG
genomic: ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAGgtatttgaat ... tcaactgcagTGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTG
EST: gi|151405266|gb|EV275080.1|EV275080
EST:     ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAG                         TGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTG
genomic: ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAGgtatttgaat ... tcaactgcagTGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTG
EST: gi|9440405|gb|BE440911.1|BE440911
EST:     ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAG                         TGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACT
genomic: ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAGgtatttgaat ... tcaactgcagTGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACT
EST: gi|254331513|gb|GR843470.1|GR843470
EST:     ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAG                         TGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTG
genomic: ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAGgtatttgaat ... tcaactgcagTGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTG
EST: gi|31468492|gb|CD410520.1|CD410520
EST:     GTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAG                         TGAAGTGGATGGATCGGATGATGAATTTGATAGTGGGAATGACAGGACTTG
genomic: GTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAGgtatttgaat ... tcaactgcagTGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTG
EST: gi|192313579|gb|FK004161.1|FK004161
EST:     ACAGATAATTGTGGTAGTGAGCTTGTTGAA-TTCGAGA-TTTGAGCC-AG                         TGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTT
genomic: ACAGATAATTGTGGTAGTGAGCTTGTTGAAATTCGAGAATTTGAGCCCAGgtatttgaat ... tcaactgcagTGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattaccttcttgtaattgattcaatacgatgcaatttgtcattcaactgcagTGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTGTTCCTGTGCGATTATGTAAATTGGAGTTTCATTAAGTTGATAGGTTCAT
                aattgat  putative branch site (score: 4)
               taattgattcaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgaggaaagtttacaaccaataattttttttttttgtttacatgctttattaccttcttgtaattgattcaatacgatgcaatttgtcattcaactgcagTGAAGTGGATGGATCGGATGATGAATTTGATAGTGGAAATGACAGAACTTGTTCCTGTGCGATTATGTAAATTGGAGTTTCATTAAGTTGATAGGTTCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - -caaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcaa