Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCAATTCCTCGCCGAGTTTTTCGTCCAGATGCTACGAACCGTTGCCGTTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTGgtacagtaaactcactccttcttcttcgatctgcgatttgccgttttgtttcccgaacaagtgagcgaaaaccgacacttcgaaatctcgctttgcgtta...

Basic information

species Glycine max
transcript GLYMA20G30950.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9204364|gb|BE330588.1|BE330588
EST:     TTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTG                         GCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
genomic: TTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTGgtacagtaaa ... tggttgaaagGCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
EST: gi|151412824|gb|EV282636.1|EV282636
EST:     TTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTG                         GCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
genomic: TTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTGgtacagtaaa ... tggttgaaagGCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
EST: gi|192313564|gb|FK004160.1|FK004160
EST:     CGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTG                         GCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
genomic: CGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTGgtacagtaaa ... tggttgaaagGCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
EST: gi|151412404|gb|EV282216.1|EV282216
EST:     TTGATCCACGCGCCGGCGACCCTCCGTTTTGATTCACCGGCACCGTTTTG                         GCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
genomic: TTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTGgtacagtaaa ... tggttgaaagGCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
EST: gi|192295398|gb|FG987012.1|FG987012
EST:     TTGATCCACGCGCCGGCGGCCTTCCGTTTTGATTCACCGGCACCGTTTTG                         GCTATTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
genomic: TTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTGgtacagtaaa ... tggttgaaagGCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
EST: gi|192300320|gb|FG988797.1|FG988797
EST:     TTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTG                         GCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
genomic: TTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTGgtacagtaaa ... tggttgaaagGCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
EST: gi|24135372|gb|BU925891.1|BU925891
EST:     TTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTG                         GCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
genomic: TTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTGgtacagtaaa ... tggttgaaagGCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
EST: gi|151410467|gb|EV280282.1|EV280282
EST:     TTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTG                         GCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
genomic: TTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTGgtacagtaaa ... tggttgaaagGCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
EST: gi|151411129|gb|EV280940.1|EV280940
EST:     TTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTG                         GCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
genomic: TTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTGgtacagtaaa ... tggttgaaagGCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
EST: gi|192313579|gb|FK004161.1|FK004161
EST:     CGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTG                         GCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT
genomic: CGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTGgtacagtaaa ... tggttgaaagGCTGTTACTTTGGTTCTTCAGAGAGAAGGGAGCCATTTATAGAAATTATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTCAATTCCTCGCCGAGTTTTTCGTCCAGATGCTACGAACCGTTGCCGTTGATCCACGCGCCGGCGACCTTCCGTTTTGATTCACCGGCACCGTTTTGgtacagtaaactcactccttcttcttcgatctgcgatttgccgttttgtttcccgaacaagtgagcgaaaaccgacacttcgaaatctcgctttgcgtta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttc