1 5' 3' | 2 5' 3' | 3 5' 3' |
gtttgctttactttcattgccattattgttgttttcattgttagttaataatatttgtttattgttgcataagagtgttgtggttcaattggaatttgctgctgcttgctgtggatttggtttttcatgttttgtattgaaatgggctttggttatttttgttggcagAGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGCCAACCCCCGGCAATTCAAGATTCCGGACTGGTTTTTGAACAGAAAGAAG
species | Glycine max |
transcript | GLYMA20G30730.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTTGACATGAACAAAAG AGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGCEST: gi|298196088|gb|HO044479.1|HO044479
genomic: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTTGACATGAACAAAAGgtttgcttta ... ttgttggcagAGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGC
EST: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTTGACATGAACAAAAG AGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGCEST: gi|193484043|gb|FK452418.1|FK452418
genomic: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTTGACATGAACAAAAGgtttgcttta ... ttgttggcagAGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGC
EST: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTTGACATGAACAAAAG AGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGCEST: gi|298197095|gb|HO041838.1|HO041838
genomic: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTTGACATGAACAAAAGgtttgcttta ... ttgttggcagAGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGC
EST: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTTGACATGAACAAAAG AGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGCEST: gi|192324370|gb|FK015721.1|FK015721
genomic: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTTGACATGAACAAAAGgtttgcttta ... ttgttggcagAGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGC
EST: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTTGACATGAACAAAAG AGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGCEST: gi|6668027|gb|AW279478.1|AW279478
genomic: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTTGACATGAACAAAAGgtttgcttta ... ttgttggcagAGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGC
EST: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTTGACATGAACAAAAG AGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGCEST: gi|192300277|gb|FG988784.1|FG988784
genomic: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTTGACATGAACAAAAGgtttgcttta ... ttgttggcagAGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGC
EST: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTCGACATGAACAAAAG AGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACAGTGGTTGCEST: gi|193642238|gb|FK587198.1|FK587198
genomic: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTTGACATGAACAAAAGgtttgcttta ... ttgttggcagAGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGC
EST: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTTGACATGAACAAAAG AGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGC
genomic: CGATTTTCTAACATTTGCTGCAAGAAGGCTGATGTTGACATGAACAAAAGgtttgcttta ... ttgttggcagAGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGC
gatttggtttttcatgttttgtattgaaatgggctttggttatttttgttggcagAGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGCCAACCCCCGGCAATTCAAGATTCCGGACTGGTTTTTGAACAGAAAGAAG
ttattttt CT-rich tract
ttttgtattgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgctttactttcattgccattattgttgttttcattgttagttaataatatttgtttattgttgcataagagtgttgtggttcaattggaatttgctgctgcttgctgtggatttggtttttcatgttttgtattgaaatgggctttggttatttttgttggcagAGCTGGTGAACTGAGTGCTGCTGAGTTGGATAGTGTGATGACTGTGGTTGCCAACCCCCGGCAATTCAAGATTCCGGACTGGTTTTTGAACAGAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG