1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaaatcaagatttttgaaactgactcttgttttggatatgtaaaaattgtgcatttgtaattttggtttgaaactgattgatccttgtcttgttttatagTCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACGAACGTAGATGGGAAGCAGAAGATAATGTTCGCTCTTACCTCAATCAAAG
species | Glycine max |
transcript | GLYMA20G30730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTCTGAGCCGCATAACTTCCCGGAATCGTGCATACCTACGTTCAATATG TCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACGEST: gi|298196088|gb|HO044479.1|HO044479
genomic: ACTCTGAGCCGCATAACTTCCCGGAATCGTGCATACCTACGTTCAATATGgtacttaatt ... tgttttatagTCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACG
EST: ACTCTGAGCCGCATAACTTCCCGGAATCGTGCATACCTACGTTCAATATG TCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACGEST: gi|298197095|gb|HO041838.1|HO041838
genomic: ACTCTGAGCCGCATAACTTCCCGGAATCGTGCATACCTACGTTCAATATGgtacttaatt ... tgttttatagTCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACG
EST: ACTCTGAGCCGCATAACTTCCCGGAATCGTGCATACCTACGTTCAATATG TCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACGEST: gi|192324370|gb|FK015721.1|FK015721
genomic: ACTCTGAGCCGCATAACTTCCCGGAATCGTGCATACCTACGTTCAATATGgtacttaatt ... tgttttatagTCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACG
EST: ACTCTGAGCCGCATAACTTCCCGGAATCGTGCATACCTACGTTCAATATG TCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACGEST: gi|6668027|gb|AW279478.1|AW279478
genomic: ACTCTGAGCCGCATAACTTCCCGGAATCGTGCATACCTACGTTCAATATGgtacttaatt ... tgttttatagTCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACG
EST: ACTCTGAGCCGCATAACTTCCCGGAATCGTGCATACCTACGTTCAATATG TCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACGEST: gi|192300277|gb|FG988784.1|FG988784
genomic: ACTCTGAGCCGCATAACTTCCCGGAATCGTGCATACCTACGTTCAATATGgtacttaatt ... tgttttatagTCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACG
EST: ACTCTGAGCCGCATAACTTCCCGGAATCGTGCATACCTACGTTCAATATG TCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACGEST: gi|207781812|gb|GD751801.1|GD751801
genomic: ACTCTGAGCCGCATAACTTCCCGGAATCGTGCATACCTACGTTCAATATGgtacttaatt ... tgttttatagTCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACG
EST: ACTCTGAGCCGCATAACTTCCCGGAATCGTGCATACCTACGTTCAATATG TCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACG
genomic: ACTCTGAGCCGCATAACTTCCCGGAATCGTGCATACCTACGTTCAATATGgtacttaatt ... tgttttatagTCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACG
attgtgcatttgtaattttggtttgaaactgattgatccttgtcttgttttatagTCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACGAACGTAGATGGGAAGCAGAAGATAATGTTCGCTCTTACCTCAATCAAAG
tccttgtcttgtttt CT-rich tract
atttgtaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaatcaagatttttgaaactgactcttgttttggatatgtaaaaattgtgcatttgtaattttggtttgaaactgattgatccttgtcttgttttatagTCGCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTGAACACGAACGTAGATGGGAAGCAGAAGATAATGTTCGCTCTTACCTCAATCAAAG
-aaatcaag
- - - - - - - - - -ctgactc
- - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg