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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATTATATTGCTCGAAATGATGACCATACCGGTCATCGAATGCTAAAGGACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGGgtaacatcttaacctattttatttacataatatgtgtgaagatgtgctttcacagcttgttttctgaaaacttacttttttggttatgaagcag

Basic information

species Glycine max
transcript GLYMA20G30540.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26045820|gb|CA783289.1|CA783289
EST:     ACACTAAAACACTTGGATCTTTTTATGACCGCTACCTTCAAAGTGCAGGG                         CTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTG
genomic: ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGGgtaacatctt ... tatgaagcagCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTG
EST: gi|298164539|gb|HO014184.1|HO014184
EST:     ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGG                         CTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTG
genomic: ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGGgtaacatctt ... tatgaagcagCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTG
EST: gi|15201816|gb|BI425074.1|BI425074
EST:     ACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGG                         CTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTG
genomic: ACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGGgtaacatctt ... tatgaagcagCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTG
EST: gi|20497823|gb|BQ272753.1|BQ272753
EST:     ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAAGG                         CTTACTTCCGTT-AATTCTGGGGAACCCAGAGCAATTGGCGGTGTTGGATT
genomic: ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGGgtaacatctt ... tatgaagcagCTTACTTC-GTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATT
EST: gi|207790807|gb|GD759592.1|GD759592
EST:     ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGG                         CTTACTTCGTTTAATTCTGG
genomic: ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGGgtaacatctt ... tatgaagcagCTTACTTCGTTTAATTCTGG