1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacatcttaacctattttatttacataatatgtgtgaagatgtgctttcacagcttgttttctgaaaacttacttttttggttatgaagcagCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTGGGAAGGGGTGTTGGTGGATTACCACGCCATTCACTAACTGATCCTGCTG
species | Glycine max |
transcript | GLYMA20G30540.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACACTAAAACACTTGGATCTTTTTATGACCGCTACCTTCAAAGTGCAGGG CTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTGEST: gi|298164539|gb|HO014184.1|HO014184
genomic: ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGGgtaacatctt ... tatgaagcagCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTG
EST: ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGG CTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTGEST: gi|15201816|gb|BI425074.1|BI425074
genomic: ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGGgtaacatctt ... tatgaagcagCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTG
EST: ACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGG CTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTGEST: gi|20497823|gb|BQ272753.1|BQ272753
genomic: ACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGGgtaacatctt ... tatgaagcagCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTG
EST: ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAAGG CTTACTTCCGTT-AATTCTGGGGAACCCAGAGCAATTGGCGGTGTTGGATTEST: gi|207790807|gb|GD759592.1|GD759592
genomic: ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGGgtaacatctt ... tatgaagcagCTTACTTC-GTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATT
EST: ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGG CTTACTTCGTTTAATTCTGG
genomic: ACACTAAAACACTTGGATCTGCTTATGACCGCTACCTTCAAAGTGCAGGGgtaacatctt ... tatgaagcagCTTACTTCGTTTAATTCTGG
agatgtgctttcacagcttgttttctgaaaacttacttttttggttatgaagcagCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTGGGAAGGGGTGTTGGTGGATTACCACGCCATTCACTAACTGATCCTGCTG
aacttac putative branch site (score: 2)
aaaacttactttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatcttaacctattttatttacataatatgtgtgaagatgtgctttcacagcttgttttctgaaaacttacttttttggttatgaagcagCTTACTTCGTTTAATTCTGGGGAAGCCAGTGCAATTGGTGGTGTTGGATTGGGAAGGGGTGTTGGTGGATTACCACGCCATTCACTAACTGATCCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA