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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtactgtttgtagcagttgtctgtttgtcctcttttaacttgttttatcgttgttctgcttcttggttgaaagttccttactctttatgctgaaatgcatgcttaatgcagCGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAG

Basic information

species Glycine max
transcript GLYMA20G30540.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30540.3 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0166g00240.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtgtactgtttgtagcagttgtctgtttgtcctcttttaacttgttttatcgttgttctgcttcttggttgaaagttccttactctttatgctgaaatgcatgcttaatgcagCGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAG
    ||    |  |||||  |          ||||||      |||||  |  ||  | ||  | | | |   ||  | |  |||   ||| || |||           |  ||||||||||| ||||||||||  |||||||||| ||||||||| |||  || |||||||| ||||||||  ||||||| |||||||
----gtaagttacttgtaataaacactccactgtcctaggcccacttggctagtcagt-tttcgttacatcactgtgattctctt---cttcatactg-----------ttttgcagCGTGGTAGAGATCCTCTTGTCCTTTGTTTCGTGGATTTTACAAGCCCAGCCTGTGCTGCAACTGCATTGAGTGCTTTGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209727749|gb|BW658669.1|BW658669
EST:     CTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGAATCCAAACAT                         CGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCC
genomic: CTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGAATCCAAACATgtaagtgtac ... cttaatgcagCGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCC
EST: gi|209727748|gb|BW658668.1|BW658668
EST:     CTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGAATCCAAACAT                         CGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCC
genomic: CTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGAATCCAAACATgtaagtgtac ... cttaatgcagCGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCC
EST: gi|58014777|gb|CX701519.1|CX701519
EST:     CTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGAATCCAAACAT                         CGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCC
genomic: CTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGAATCCAAACATgtaagtgtac ... cttaatgcagCGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCC
EST: gi|22523232|gb|BU082043.1|BU082043
EST:     CTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGAATCCAAACAT                         CGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCC
genomic: CTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGAATCCAAACATgtaagtgtac ... cttaatgcagCGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttcttggttgaaagttccttactctttatgctgaaatgcatgcttaatgcagCGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAG
                         tctttat  TA-rich tract