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gtatcctttttgttctcagatactgtataggaattgtataatcatactttcaactgtcttgtcacttcatatattttaaattacctatttttgttctcagatactgtataggaattgtattgtcatactttcaactgtcttgtccttaatgtcatttttagATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGAATCCAAACAT
species | Glycine max |
transcript | GLYMA20G30540.2 |
intron # | 3 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TTTATATGTTGAAGGTCTTCCATCTGACAGTACGAGACGGGAAGTGGCTC ATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGEST: gi|209727748|gb|BW658668.1|BW658668
genomic: TTTATATGTTGAAGGTCTTCCATCTGACAGTACGAGACGGGAAGTGGCTCgtatcctttt ... tcatttttagATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAG
EST: TTTATATGTTGAAGGTCTTCCATCTGACAGTACGAGACGGGAAGTGGCTC ATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGEST: gi|58014777|gb|CX701519.1|CX701519
genomic: TTTATATGTTGAAGGTCTTCCATCTGACAGTACGAGACGGGAAGTGGCTCgtatcctttt ... tcatttttagATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAG
EST: TTTATATGTTGAAGGTCTTCCATCTGACAGTACGAGACGGGAAGTGGCTC ATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGEST: gi|22523232|gb|BU082043.1|BU082043
genomic: TTTATATGTTGAAGGTCTTCCATCTGACAGTACGAGACGGGAAGTGGCTCgtatcctttt ... tcatttttagATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAG
EST: TTTATATGTTGAAGGTCTTCCATCTGACAGTACGAGACGGGAAGTGGCTC ATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAG
genomic: TTTATATGTTGAAGGTCTTCCATCTGACAGTACGAGACGGGAAGTGGCTCgtatcctttt ... tcatttttagATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAG
tataggaattgtattgtcatactttcaactgtcttgtccttaatgtcatttttagATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGAATCCAAACAT
gtccttaat putative branch site
tcattttt putative PPT
ttaatgtcattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcctttttgttctcagatactgtataggaattgtataatcatactttcaactgtcttgtcacttcatatattttaaattacctatttttgttctcagatactgtataggaattgtattgtcatactttcaactgtcttgtccttaatgtcatttttagATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGACTTGTGAGCAAAGAATCCAAACAT
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