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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtactgtttgcaacagttgtctgtttgccctcttttaacttggtttatcgtttcacactctttatgctgaaatacatgcttattgcagCGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAG

Basic information

species Glycine max
transcript GLYMA20G30540.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30540.4 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0166g00240.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtgtactgtttgcaacagttgtctgtt-tgccctcttttaacttggt--ttatcgtttcacactctttatgctgaaatacatgct-tattgcagCGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAG
||||||    |||    |||| |   ||||  |   | |  ||  || |    || ||||| ||      | || ||    | ||| || | |||||||||||| ||||||||||  |||||||||| ||||||||| |||  || |||||||| ||||||||  ||||||| |||||||
gtaagttacttgtaataaacactccactgtcctaggcccacttggctagtcagttttcgttacatcactgtgattctcttcttcatactgttttgcagCGTGGTAGAGATCCTCTTGTCCTTTGTTTCGTGGATTTTACAAGCCCAGCCTGTGCTGCAACTGCATTGAGTGCTTTGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15201816|gb|BI425074.1|BI425074
EST:     CTTTTGTTGGATATAGAGAAGTAAGGCTTGTGAGCAAAGAATCCAAACAT                         CGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCC
genomic: CTTTTGTTGGATATAGAGAAGTAAGGCTTGTGAGCAAAGAATCCAAACATgtaagtgtac ... cttattgcagCGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaacttggtttatcgtttcacactctttatgctgaaatacatgcttattgcagCGTGGTGGAGATCCTCTAATCCTTTGTTTTGTGGATTTTGCAAATCCGGCCTGTGCAGCAACTGCTCTGAGTGCATTGCAAG
 ttttaac  putative branch site (score: 2)
                                    aaatacat  TA-rich tract