1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatccttttggttctcagttactgtttaagaattgtatcatcacacattcacactttcaactgtgctttgtcagcttcatttattttaatctagctattcaaattccttaatgccatttttagATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGGCTTGTGAGCAAAGAATCCAAACAT
species | Glycine max |
transcript | GLYMA20G30540.1 |
intron # | 5 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TTTATATGTTGAAGGTCTCCCATCTGACAGCACAAGAAGGGAAGTGGCTC ATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGGCTTGTGAGCAAAG
genomic: TTTATATGTTGAAGGTCTCCCATCTGACAGCACAAGAAGGGAAGTGGCTCgtatcctttt ... ccatttttagATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGGCTTGTGAGCAAAG
tgtcagcttcatttattttaatctagctattcaaattccttaatgccatttttagATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGGCTTGTGAGCAAAGAATCCAAACAT
ttccttaat putative branch site
ccattttt putative PPT
atttattttaatctag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccttttggttctcagttactgtttaagaattgtatcatcacacattcacactttcaactgtgctttgtcagcttcatttattttaatctagctattcaaattccttaatgccatttttagATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTAAGGCTTGTGAGCAAAGAATCCAAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
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