1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttctggctcctgaaactcaattcattattattgccactttgaactaagaagcttaaattatcttgcatgtgtaaaatatttggtggtgaatgtgtgcagCCGGCGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCGGAGAACCGTGATAGGGTATACAAAAGGTACAATGTTTGAAGCACGGCCAAGCGGCAC
species | Glycine max |
transcript | GLYMA20G30530.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGGTTGCCTTGCGTGATGGAACAAGAGATCTGAAGCGAGTGCGGTTCAG CCGGCGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCGGAGAACCGEST: gi|58014843|gb|CX701585.1|CX701585
genomic: CTGGTTGCCTTGCGTGATGGAACAAGAGATCTGAAGCGAGTGCGGTTCAGgtaataaaag ... atgtgtgcagCCGGCGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCGGAGAACCG
EST: CTGGTTGCCTTGCGTGATGGAACAAGAGATCTGAAGCGAGTGCGGTTCAG CCGGCGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCGGAGAACCG
genomic: CTGGTTGCCTTGCGTGATGGAACAAGAGATCTGAAGCGAGTGCGGTTCAGgtaataaaag ... atgtgtgcagCCGGCGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCGGAGAACCG
taagaagcttaaattatcttgcatgtgtaaaatatttggtggtgaatgtgtgcagCCGGCGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCGGAGAACCGTGATAGGGTATACAAAAGGTACAATGTTTGAAGCACGGCCAAGCGGCAC
atgtgtaaaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctggctcctgaaactcaattcattattattgccactttgaactaagaagcttaaattatcttgcatgtgtaaaatatttggtggtgaatgtgtgcagCCGGCGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCGGAGAACCGTGATAGGGTATACAAAAGGTACAATGTTTGAAGCACGGCCAAGCGGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
tttctgg
- - - -ctcctga
- - - - - - - - - caattca
- - - - - - - - - - - - - - - - tgccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtggt