1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aactatgtaaaacttgagcattataatttgatgtctttatgatgcttatatatctttacatgttatgacatcaagagaaatctaacataaaatttgttagGTTGAGACCCTGAGACAGAGATGCGAACTGCAAGAATTGGAGCTTCAAAGGTCAACAAAAAAAGCTCAGGAAGCTATGGCAGTGGCTGCAGAGGAATCCG
species | Glycine max |
transcript | GLYMA20G30530.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAAAACAAATGAACTTTTGAATCAGGAAGTGTTGAAGTTACGCGGTCAG GTTGAGACCCTGAGACAGAGATGCGAACTGCAAGAATTGGAGCTTCAAAGGEST: gi|19346225|gb|BM891105.1|BM891105
genomic: AGAAAACAAATGAACTTTTGAATCAGGAAGTGTTGAAGTTACGCGGTCAGgtataatatt ... aatttgttagGTTGAGACCCTGAGACAGAGATGCGAACTGCAAGAATTGGAGCTTCAAAGG
EST: AGAAAACAAATGAACTTTTGAATCAGGAAGTGTTGAAGTTACGCGGTCAG GTTGAGACCCTGAGACAGAGATGCGAACTGCAAGAATTGGAGCTTCAAA
genomic: AGAAAACAAATGAACTTTTGAATCAGGAAGTGTTGAAGTTACGCGGTCAGgtataatatt ... aatttgttagGTTGAGACCCTGAGACAGAGATGCGAACTGCAAGAATTGGAGCTTCAAA
ttatatatctttacatgttatgacatcaagagaaatctaacataaaatttgttagGTTGAGACCCTGAGACAGAGATGCGAACTGCAAGAATTGGAGCTTCAAAGGTCAACAAAAAAAGCTCAGGAAGCTATGGCAGTGGCTGCAGAGGAATCCG
atctaac putative branch site (score: 2)
aaatctaacataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactatgtaaaacttgagcattataatttgatgtctttatgatgcttatatatctttacatgttatgacatcaagagaaatctaacataaaatttgttagGTTGAGACCCTGAGACAGAGATGCGAACTGCAAGAATTGGAGCTTCAAAGGTCAACAAAAAAAGCTCAGGAAGCTATGGCAGTGGCTGCAGAGGAATCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- ctatgta
- - - - - - - - - - - - - - tgatgtc
- - - - - - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagaaa