Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgctttctcatgtttctcctcgtctttacatatcctccccgctgttgttttctaactatttgtccatcgtttcag

Basic information

species Glycine max
transcript GLYMA20G30160.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10847645|gb|BF070292.1|BF070292
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTA
EST: gi|58023574|gb|CX710315.1|CX710315
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|208297778|gb|GE090963.1|GE090963
EST:     GGCAATTTCCTTTGAGTCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: GGCAATTTCCTTTGAG-CTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|151395451|gb|EV265328.1|EV265328
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|16343438|gb|BI969033.1|BI969033
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|6725741|gb|AW310140.1|AW310140
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|31456462|gb|CD398490.1|CD398490
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|6724978|gb|AW309377.1|AW309377
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|192332911|gb|FK025008.1|FK025008
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|58023303|gb|CX710044.1|CX710044
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA