Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttgctttctcatgtttctcctcgtctttacatatcctccccgctgttgttttctaactatttgtccatcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAAGTGCACTCTCTATCTGTTCTGCATGGTGGTTCCCCAGCAGTACACTGCA

Basic information

species Glycine max
transcript GLYMA20G30160.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10847645|gb|BF070292.1|BF070292
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTA
EST: gi|58023574|gb|CX710315.1|CX710315
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|208297778|gb|GE090963.1|GE090963
EST:     GGCAATTTCCTTTGAGTCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: GGCAATTTCCTTTGAG-CTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|151395451|gb|EV265328.1|EV265328
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|16343438|gb|BI969033.1|BI969033
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|6725741|gb|AW310140.1|AW310140
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|31456462|gb|CD398490.1|CD398490
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|6724978|gb|AW309377.1|AW309377
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|192332911|gb|FK025008.1|FK025008
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
EST: gi|58023303|gb|CX710044.1|CX710044
EST:     ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAG                         TCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA
genomic: ATGATCACATGGCAATTTCCTTTGAGCTGTCTGCAATTAGTAAACAGAAGgtttgtttgc ... atcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtctttacatatcctccccgctgttgttttctaactatttgtccatcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAAGTGCACTCTCTATCTGTTCTGCATGGTGGTTCCCCAGCAGTACACTGCA
                             ttctaac  putative branch site (score: 1)
                                              tcgtttc  putative PPT
                           ttttctaactattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgtttgctttctcatgtttctcctcgtctttacatatcctccccgctgttgttttctaactatttgtccatcgtttcagTCTGAGAGTGCATATTTGGAGTTGGAGGAGGTACCTGAGTGGTTGCCTGAAGTGCACTCTCTATCTGTTCTGCATGGTGGTTCCCCAGCAGTACACTGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG