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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgttctatgttcttttgttcatattatgcatacaatgtaatatataaacgtgattggcattcttgaatggtagtttcttggtagtggttgctattacttatgatgctgttttcatttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTTTCCAGATTCACTAGATGGACCTGTGTATTGATGGACGAGCTTTCATATT

Basic information

species Glycine max
transcript GLYMA20G29990.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37996882|gb|CF808471.1|CF808471
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|254345346|gb|GR851615.1|GR851615
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|4313686|gb|AI460805.1|AI460805
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|6725710|gb|AW310109.1|AW310109
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|213614950|gb|DB978355.1|DB978355
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|31458550|gb|CD400578.1|CD400578
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTC----TTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|254318893|gb|GR828729.1|GR828729
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|6719054|gb|AW306701.1|AW306701
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|209696803|gb|BW680424.1|BW680424
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|31309612|gb|CD394815.1|CD394815
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTC----TTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|6719754|gb|AW307401.1|AW307401
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|21887245|gb|BQ740458.1|BQ740458
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|10847478|gb|BF070160.1|BF070160
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCATGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAAAAGAAA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAA
EST: gi|209701759|gb|BW655900.1|BW655900
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|20811927|gb|BQ296405.1|BQ296405
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|21600582|gb|BQ610913.1|BQ610913
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|213617726|gb|DB959366.1|DB959366
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|254318894|gb|GR828730.1|GR828730
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|193542233|gb|FK494035.1|FK494035
EST:     CGTGCAAGGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCGGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|7030348|gb|AW460131.1|AW460131
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCATGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|209696804|gb|BW680425.1|BW680425
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|13479353|gb|BG508696.1|BG508696
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTC----TTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|6718758|gb|AW306405.1|AW306405
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|192306596|gb|FG997252.1|FG997252
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGGGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|22933058|gb|BU550197.1|BU550197
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|14990627|gb|BI316300.1|BI316300
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCATGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|298165984|gb|HO008955.1|HO008955
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTA----CTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|23733318|gb|BU764850.1|BU764850
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACCAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|12773058|gb|BG237985.1|BG237985
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|4405693|gb|AI507842.1|AI507842
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|6718947|gb|AW306594.1|AW306594
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|7284867|gb|AW597354.1|AW597354
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|209725624|gb|BW663113.1|BW663113
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|13791653|gb|BG654244.1|BG654244
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|31458362|gb|CD400390.1|CD400390
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTA----CTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|213593628|gb|DB977460.1|DB977460
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|6134997|gb|AW133390.1|AW133390
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|31469531|gb|CD411559.1|CD411559
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTA----CTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|58023808|gb|CX710549.1|CX710549
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|209725623|gb|BW663112.1|BW663112
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCT
EST: gi|6719444|gb|AW307091.1|AW307091
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|22932776|gb|BU549915.1|BU549915
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|15337543|gb|BI498199.1|BI498199
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|18717532|gb|BM522955.1|BM522955
EST:     AGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: AGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|13790374|gb|BG652965.1|BG652965
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTA----CTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|10843396|gb|BF066695.1|BF066695
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCATGAAGATGAG                         GGCTGGGGGTGCTGGAGACAAGAAGAAA
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAA
EST: gi|5057742|gb|AI736218.1|AI736218
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|209709264|gb|BW678683.1|BW678683
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|7639511|gb|AW733832.1|AW733832
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|15287561|gb|BI471452.1|BI471452
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|193312888|gb|FK279557.1|FK279557
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|213598081|gb|DB972269.1|DB972269
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|31462377|gb|CD404405.1|CD404405
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTA----CTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|213597801|gb|DB960358.1|DB960358
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|209709265|gb|BW678684.1|BW678684
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|254326250|gb|GR840842.1|GR840842
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|6847676|gb|AW349966.1|AW349966
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|21600861|gb|BQ611192.1|BQ611192
EST:     CGTGTTATTTTTAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|23055198|gb|BU577661.1|BU577661
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|22932579|gb|BU549718.1|BU549718
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTA----CTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|10232615|gb|BE801503.1|BE801503
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|4313572|gb|AI460691.1|AI460691
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCT
EST: gi|193618257|gb|FK572465.1|FK572465
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
EST: gi|192298190|gb|FG992040.1|FG992040
EST:     CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAG                         GGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT
genomic: CGTGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGgttgttctat ... ttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtttcttggtagtggttgctattacttatgatgctgttttcatttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTTTCCAGATTCACTAGATGGACCTGTGTATTGATGGACGAGCTTTCATATT
                                   ctgttttcattttt  CT-rich tract
                                      ttttcattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttgttctatgttcttttgttcatattatgcatacaatgtaatatataaacgtgattggcattcttgaatggtagtttcttggtagtggttgctattacttatgatgctgttttcatttttgtgcagGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTATTTACTCTTTTCCAGATTCACTAGATGGACCTGTGTATTGATGGACGAGCTTTCATATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT