1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttcatgtttaggtgattttatgctttaggtggtatgtggattccaatacataaataaattggtttcactttaacaatgttccttttcttggtttatgtagGTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAACTACTTGAGTTGTGGGAAGGAAACACCCCAAATCTCAATGATAAAGATC
species | Glycine max |
transcript | GLYMA20G29950.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGCTGGTGTCTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAAEST: gi|192321496|gb|FK012874.1|FK012874
genomic: TGGCTGCTGGTGTCTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtacttctgt ... gtttatgtagGTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAA
EST: TGGCTGCTGGTGTCTTGCCTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAAEST: gi|16343545|gb|BI969140.1|BI969140
genomic: TGGCTGCTGGTGTCTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtacttctgt ... gtttatgtagGTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAA
EST: TGGCTGCTGGTGTCTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAAEST: gi|193509021|gb|FK466065.1|FK466065
genomic: TGGCTGCTGGTGTCTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtacttctgt ... gtttatgtagGTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAA
EST: TGGCTGCTGGTGTCTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAAEST: gi|213588142|gb|DB984229.1|DB984229
genomic: TGGCTGCTGGTGTCTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtacttctgt ... gtttatgtagGTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAA
EST: TGGCTGCTGGTGTCTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTTCTACTTTGGGACTTGTAGTTGTGATCTCTTGGATGAAAAGGGAAEST: gi|209715393|gb|BW684691.1|BW684691
genomic: TGGCTGCTGGTGTCTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtacttctgt ... gtttatgtagGTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAA
EST: TGGCTGCTGGTGTCTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAAEST: gi|207797196|gb|GD771162.1|GD771162
genomic: TGGCTGCTGGTGTCTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtacttctgt ... gtttatgtagGTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAA
EST: GTCTGCTTGGTGTCTTGACTCACTCACCTCAACCTGCACTTCTTTATCTG GTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAA
genomic: G-CTGC-TGGTGTCTTGACTCACTCACCTCAACCTGCACTTCTTTATCTGgtacttctgt ... gtttatgtagGTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAA
atacataaataaattggtttcactttaacaatgttccttttcttggtttatgtagGTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAACTACTTGAGTTGTGGGAAGGAAACACCCCAAATCTCAATGATAAAGATC
ctttaac putative branch site (score: 3)
ttccttttcttggttt putative PPT
taaataaattggttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatgtttaggtgattttatgctttaggtggtatgtggattccaatacataaataaattggtttcactttaacaatgttccttttcttggtttatgtagGTGCCTTCTACTTTGGGACCTGTAGTTGTGATCTCTTGGATGAAAAGGGAACTACTTGAGTTGTGGGAAGGAAACACCCCAAATCTCAATGATAAAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA