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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATCACTTGCGAGAAATGGGTGGTATCCCCAATTCCCCATTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtctttcctctaaaccctaatttcccaatcccctcctcctccttcttccacaacacacttcgcttcaatctcggtgatgggttagatcatcgtttg...

Basic information

species Glycine max
transcript GLYMA20G29950.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715392|gb|BW684690.1|BW684690
EST:     TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
genomic: TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... ctatatgcagGTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|41145855|gb|CK606066.1|CK606066
EST:     TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
genomic: TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... ctatatgcagGTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|192294471|gb|FG987400.1|FG987400
EST:     TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
genomic: TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... ctatatgcagGTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|213605376|gb|DB966925.1|DB966925
EST:     TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
genomic: TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... ctatatgcagGTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|6502386|gb|AW203759.1|AW203759
EST:     TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
genomic: TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... ctatatgcagGTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|298189699|gb|HO038102.1|HO038102
EST:     TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
genomic: TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... ctatatgcagGTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|298178703|gb|HO024438.1|HO024438
EST:     GAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
genomic: GAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... ctatatgcagGTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|192295797|gb|FG990863.1|FG990863
EST:     TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
genomic: TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... ctatatgcagGTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|151406490|gb|EV276305.1|EV276305
EST:     TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
genomic: TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... ctatatgcagGTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|151401710|gb|EV271523.1|EV271523
EST:     TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
genomic: TTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... ctatatgcagGTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
EST: gi|8284509|gb|BE022068.1|BE022068
EST:     GCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAG                         GTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC
genomic: GCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtcttt ... ctatatgcagGTTGCACGGTTTTAACTGCTTAGGTTTTTGTCTTCAAAATTAAAACTGTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACATCACTTGCGAGAAATGGGTGGTATCCCCAATTCCCCATTGAGCGCACCGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGgtcagtctttcctctaaaccctaatttcccaatcccctcctcctccttcttccacaacacacttcgcttcaatctcggtgatgggttagatcatcgtttg

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG